| Definition | Halothermothrix orenii H 168 chromosome, complete genome. |
|---|---|
| Accession | NC_011899 |
| Length | 2,578,146 |
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The map label for this gene is 220931135
Identifier: 220931135
GI number: 220931135
Start: 291474
End: 292844
Strand: Reverse
Name: 220931135
Synonym: Hore_02870
Alternate gene names: NA
Gene position: 292844-291474 (Counterclockwise)
Preceding gene: 220931142
Following gene: 220931120
Centisome position: 11.36
GC content: 37.78
Gene sequence:
>1371_bases ATGATAGAAAATTCAAATTATCAATCCTTAAGAAAAGATATTTTTAAACAACTCTGCAAAGATTTATATAATGACCAGAT CAAAAAGACTATTAACAATCTTCCATATCAACTCACAAAAAAAGATAGTCATGAAGAACTCGACCTTATTAAAAATGAAA TACTCCTGGCTATGGGTCTAAATCCTACTGCAAAAAATGACACAGAATTATCAGCTGAATTGAATACGGCCCTTAACTTA AAAGAAGTTAAACAGCCGGTAGTTACAGTTAATCGAAAAATCTGTGACCTCTGCCAGAAAAAATATGGACCAGATTATTG CAGAGTTGGGTGTGATATTAATGAAAAAGAAGGACTATTAATTGAAGACGGACGTTGTATTTCCTGTGGTAAATGCATTC CAAAATGTCCCCTTGAAGCTGTTTCTGATAAGGTTGAATTTTTTCCCCTCTATAAATACCTTAAAAACGATACCCAGGTT TATGCAAATGTGGCCCCGGCCATTATGGGACAGTTTGGTGAAAAGGTCACAGCCGGACACCTCCGGAGTGCTTTTAAAAA AATTGGATTTACCGACATGGTAGAAGTGGCCCTCTTTGCTGATATAGTTACTTTAAGAGAAGCGGATGAATATAACCGCC TTGTGCAGAAAGAGGGTGATTTTATGATTACAAGTTGTTGCTGCCCGGTATGGGTAAATATGGTAACAAAACATTACCCC TCGTTAAATAACCATCTAACCAGGACCGTATCCCCAATGATAGCCTCCGGAAGATTGATAAAGCTACTTTTTCCTGATGC CATAACTGTATTTATTGGCCCCTGCATTGCCAAAAAAGCAGAGGCGAAACATCCTGAATTAAAGGGTGCCATTGACTTTG TCTTAACCTTTGATGAATTAGATCTCATTTTTGAAGCCCTTAATATTGACCCAGCAAGACTACCTGAAGATAATAAAGAA CAGTCATCCAGAGGAGGTAGAGTCTATGCCCGGACTGGAGGAGTCAGCCAGGCAGTTTCTGATACAGTTAAGCGGCTTTC TCCCCATGAGCATGTAAAATTTAAAGCAAATCAGGCCGATGGGGTAAAAAACTGCAAAAAGTTGCTTGATGAATTAAAAG AAGGTAAAGTTGAGGCTACATTTATAGAGGGAATGGGCTGTGAGGGAGGATGTGTCGGTGGACCAAAAAGAATTAATGAT ATTAAAGAAGCTACCAGGCTTGTAAACAAATTCGGCAGTAAAGCCCGGTCTCAAACCCCTATTGATAACAATAACATATA TCACATTTTTAATTACCTAACACAGCTTATAGAATCCCAGGAACAAATAATTGATGAAGAAACATATGATAATATTCTGG TAAGGAAATAA
Upstream 100 bases:
>100_bases GCAACGACCCGGTTTTACTGCCCCTATAATTTTCAACTGAGACAGTCCTGAAACTTTGAGACTATCATTAAATTATGGTA ACAGATATGAGAGGGATATT
Downstream 100 bases:
>100_bases AAAACCTGGCTTCAGGGCCTATTTTTAAAAGGAGAATATCTTGAACCCCAAAAATCAGTTCTTTAATATAAAAAATAGAA CGTAACTGATAAAATTTCAG
Product: ferredoxin hydrogenase
Products: NA
Alternate protein names: CpI; Fe-only hydrogenase; [Fe] hydrogenase [H]
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MIENSNYQSLRKDIFKQLCKDLYNDQIKKTINNLPYQLTKKDSHEELDLIKNEILLAMGLNPTAKNDTELSAELNTALNL KEVKQPVVTVNRKICDLCQKKYGPDYCRVGCDINEKEGLLIEDGRCISCGKCIPKCPLEAVSDKVEFFPLYKYLKNDTQV YANVAPAIMGQFGEKVTAGHLRSAFKKIGFTDMVEVALFADIVTLREADEYNRLVQKEGDFMITSCCCPVWVNMVTKHYP SLNNHLTRTVSPMIASGRLIKLLFPDAITVFIGPCIAKKAEAKHPELKGAIDFVLTFDELDLIFEALNIDPARLPEDNKE QSSRGGRVYARTGGVSQAVSDTVKRLSPHEHVKFKANQADGVKNCKKLLDELKEGKVEATFIEGMGCEGGCVGGPKRIND IKEATRLVNKFGSKARSQTPIDNNNIYHIFNYLTQLIESQEQIIDEETYDNILVRK
Sequences:
>Translated_456_residues MIENSNYQSLRKDIFKQLCKDLYNDQIKKTINNLPYQLTKKDSHEELDLIKNEILLAMGLNPTAKNDTELSAELNTALNL KEVKQPVVTVNRKICDLCQKKYGPDYCRVGCDINEKEGLLIEDGRCISCGKCIPKCPLEAVSDKVEFFPLYKYLKNDTQV YANVAPAIMGQFGEKVTAGHLRSAFKKIGFTDMVEVALFADIVTLREADEYNRLVQKEGDFMITSCCCPVWVNMVTKHYP SLNNHLTRTVSPMIASGRLIKLLFPDAITVFIGPCIAKKAEAKHPELKGAIDFVLTFDELDLIFEALNIDPARLPEDNKE QSSRGGRVYARTGGVSQAVSDTVKRLSPHEHVKFKANQADGVKNCKKLLDELKEGKVEATFIEGMGCEGGCVGGPKRIND IKEATRLVNKFGSKARSQTPIDNNNIYHIFNYLTQLIESQEQIIDEETYDNILVRK >Mature_456_residues MIENSNYQSLRKDIFKQLCKDLYNDQIKKTINNLPYQLTKKDSHEELDLIKNEILLAMGLNPTAKNDTELSAELNTALNL KEVKQPVVTVNRKICDLCQKKYGPDYCRVGCDINEKEGLLIEDGRCISCGKCIPKCPLEAVSDKVEFFPLYKYLKNDTQV YANVAPAIMGQFGEKVTAGHLRSAFKKIGFTDMVEVALFADIVTLREADEYNRLVQKEGDFMITSCCCPVWVNMVTKHYP SLNNHLTRTVSPMIASGRLIKLLFPDAITVFIGPCIAKKAEAKHPELKGAIDFVLTFDELDLIFEALNIDPARLPEDNKE QSSRGGRVYARTGGVSQAVSDTVKRLSPHEHVKFKANQADGVKNCKKLLDELKEGKVEATFIEGMGCEGGCVGGPKRIND IKEATRLVNKFGSKARSQTPIDNNNIYHIFNYLTQLIESQEQIIDEETYDNILVRK
Specific function: Unknown
COG id: COG4624
COG function: function code R; Iron only hydrogenase large subunit, C-terminal domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR012675 - InterPro: IPR009016 - InterPro: IPR004108 - InterPro: IPR003149 - InterPro: IPR013352 - InterPro: IPR001041 [H]
Pfam domain/function: PF02906 Fe_hyd_lg_C; PF02256 Fe_hyd_SSU [H]
EC number: =1.12.7.2 [H]
Molecular weight: Translated: 51256; Mature: 51256
Theoretical pI: Translated: 7.10; Mature: 7.10
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIENSNYQSLRKDIFKQLCKDLYNDQIKKTINNLPYQLTKKDSHEELDLIKNEILLAMGL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHEEEEECC NPTAKNDTELSAELNTALNLKEVKQPVVTVNRKICDLCQKKYGPDYCRVGCDINEKEGLL CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEE IEDGRCISCGKCIPKCPLEAVSDKVEFFPLYKYLKNDTQVYANVAPAIMGQFGEKVTAGH EECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH LRSAFKKIGFTDMVEVALFADIVTLREADEYNRLVQKEGDFMITSCCCPVWVNMVTKHYP HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCC SLNNHLTRTVSPMIASGRLIKLLFPDAITVFIGPCIAKKAEAKHPELKGAIDFVLTFDEL CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCHHCHHHHEEEHHHH DLIFEALNIDPARLPEDNKEQSSRGGRVYARTGGVSQAVSDTVKRLSPHEHVKFKANQAD HHHHHHHCCCHHCCCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCC GVKNCKKLLDELKEGKVEATFIEGMGCEGGCVGGPKRINDIKEATRLVNKFGSKARSQTP CHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC IDNNNIYHIFNYLTQLIESQEQIIDEETYDNILVRK CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEECC >Mature Secondary Structure MIENSNYQSLRKDIFKQLCKDLYNDQIKKTINNLPYQLTKKDSHEELDLIKNEILLAMGL CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHEEEEECC NPTAKNDTELSAELNTALNLKEVKQPVVTVNRKICDLCQKKYGPDYCRVGCDINEKEGLL CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCEE IEDGRCISCGKCIPKCPLEAVSDKVEFFPLYKYLKNDTQVYANVAPAIMGQFGEKVTAGH EECCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH LRSAFKKIGFTDMVEVALFADIVTLREADEYNRLVQKEGDFMITSCCCPVWVNMVTKHYP HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCC SLNNHLTRTVSPMIASGRLIKLLFPDAITVFIGPCIAKKAEAKHPELKGAIDFVLTFDEL CHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCHHCHHHHEEEHHHH DLIFEALNIDPARLPEDNKEQSSRGGRVYARTGGVSQAVSDTVKRLSPHEHVKFKANQAD HHHHHHHCCCHHCCCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCCCC GVKNCKKLLDELKEGKVEATFIEGMGCEGGCVGGPKRINDIKEATRLVNKFGSKARSQTP CHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC IDNNNIYHIFNYLTQLIESQEQIIDEETYDNILVRK CCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1911757; 9836629; 10529166 [H]