Click here to switch to the map view.

The map label for this gene is ctsR [H]

Identifier: 220930932

GI number: 220930932

Start: 102182

End: 102655

Strand: Direct

Name: ctsR [H]

Synonym: Hore_00840

Alternate gene names: 220930932

Gene position: 102182-102655 (Clockwise)

Preceding gene: 220930931

Following gene: 220930933

Centisome position: 3.96

GC content: 35.44

Gene sequence:

>474_bases
ATGGCCAGCCTTGCAGATCAGATAGAAAAATACTTACGAAAATTGTTAACAAAATATGAAGGGGAAGTGGAAATTAAAAG
GAATCAGTTAGCCAGTGATTTTGATTGTGTTCCTTCCCAGATTAACTATGTCTTAAATACCAGGTTTACTGTTGAAAAGG
GTTATCTGGTTGAAAGTCAAAGAGGTGGTGGGGGTTACATCAGAATAATCAGAGTTAGTCTTGATTCAAACCGTAAAACC
TTAAAGGAGCTAATATCAAGAATAGATGGTCCAATAACACAACGTGAAGCTGAAGGTATAATTGACCGTCTTTTTGATAA
CAATTTTATAACAGAAAAAGAGAGGGATATTATGAAAGTAGCGGTTAATCGTAAATACATTAATGTAGAACTTCCTCACC
GGGATTATATCAGGAGTAGGCTGTTAAGAGGTATGTTGAAGACTATTATAAAACATGAAGATGAGGAGGGATAG

Upstream 100 bases:

>100_bases
TTAATTATAATAATATTTGGCATATAAAAGAATTGGGTGTATTATATAAACAAGGAAGGTCAAAAAAAGTCAAAGACAAA
TTTGGGGAGGTTATGGTAAA

Downstream 100 bases:

>100_bases
AAATGTTGTGTCAAAGATGTGGTAAAAGAGAAGCTACGGTTCATTTGACCAAGATTATAAATGGGGAGAAAAATGAAATA
TTTCTCTGTAAAGAATGTGC

Product: transcriptional repressor, CtsR

Products: NA

Alternate protein names: Class three stress gene repressor [H]

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MASLADQIEKYLRKLLTKYEGEVEIKRNQLASDFDCVPSQINYVLNTRFTVEKGYLVESQRGGGGYIRIIRVSLDSNRKT
LKELISRIDGPITQREAEGIIDRLFDNNFITEKERDIMKVAVNRKYINVELPHRDYIRSRLLRGMLKTIIKHEDEEG

Sequences:

>Translated_157_residues
MASLADQIEKYLRKLLTKYEGEVEIKRNQLASDFDCVPSQINYVLNTRFTVEKGYLVESQRGGGGYIRIIRVSLDSNRKT
LKELISRIDGPITQREAEGIIDRLFDNNFITEKERDIMKVAVNRKYINVELPHRDYIRSRLLRGMLKTIIKHEDEEG
>Mature_156_residues
ASLADQIEKYLRKLLTKYEGEVEIKRNQLASDFDCVPSQINYVLNTRFTVEKGYLVESQRGGGGYIRIIRVSLDSNRKTL
KELISRIDGPITQREAEGIIDRLFDNNFITEKERDIMKVAVNRKYINVELPHRDYIRSRLLRGMLKTIIKHEDEEG

Specific function: Controls the expression of the cellular protein quality control genes clpC, clpE and clpP. Acts as a repressor of these class III stress genes by binding to a directly repeated heptanucleotide operator sequence (A/GGTCAAA NAN A/GGTCAAA). After heat shock,

COG id: COG4463

COG function: function code K; Transcriptional repressor of class III stress genes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CtsR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008463 [H]

Pfam domain/function: PF05848 CtsR [H]

EC number: NA

Molecular weight: Translated: 18333; Mature: 18202

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLADQIEKYLRKLLTKYEGEVEIKRNQLASDFDCVPSQINYVLNTRFTVEKGYLVESQ
CCHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCHHHHHHHHCCEEEEECCEEEECC
RGGGGYIRIIRVSLDSNRKTLKELISRIDGPITQREAEGIIDRLFDNNFITEKERDIMKV
CCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AVNRKYINVELPHRDYIRSRLLRGMLKTIIKHEDEEG
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ASLADQIEKYLRKLLTKYEGEVEIKRNQLASDFDCVPSQINYVLNTRFTVEKGYLVESQ
CHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCCCHHHHHHHHCCEEEEECCEEEECC
RGGGGYIRIIRVSLDSNRKTLKELISRIDGPITQREAEGIIDRLFDNNFITEKERDIMKV
CCCCCEEEEEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
AVNRKYINVELPHRDYIRSRLLRGMLKTIIKHEDEEG
HHCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]