Click here to switch to the map view.

The map label for this gene is yugU [H]

Identifier: 220930924

GI number: 220930924

Start: 88378

End: 88776

Strand: Direct

Name: yugU [H]

Synonym: Hore_00760

Alternate gene names: 220930924

Gene position: 88378-88776 (Clockwise)

Preceding gene: 220930923

Following gene: 220930925

Centisome position: 3.43

GC content: 36.34

Gene sequence:

>399_bases
ATGTTTAAAGAATTCCATGTAAAAACAACAGGGAGGGTTCAATTAATTGATATCACAGATAAAGTCAGGGACTGTCTCAA
CGAAGCAGGAATAGAAAATGGTATATTAACGGTTTTTACTCCCCATACCACTGCTGCTATAACCATAAATGAAAATGCTG
ATCCCGATGTAAAAAGAGATATTATTTCTGAAATAAATAAAGTAATTCCCTTTGATGATAATTATAAGCACCTGGAAGGA
AATTCTGCTGCTCATATAAAAAGCAGTCTGTTTGGTGTTAGTGAGAGCATTATTATAAACAACAAGAGGATGAGACTGGG
GCGCTGGCAGGGTATTTATTTCTGTGAGTTTGATGGTCCCCGCCGGCGAAAAGTATATGTCCAGATTATTGGTAAATAA

Upstream 100 bases:

>100_bases
AATTGTAAGGTTATAAGCCAGAGGGGGTAGCCCCTTTGGCTTTTTAATTAACAAATTATTTATTAATTAAAGAAAATTAT
TCAGTCAGGAGGGAATGACA

Downstream 100 bases:

>100_bases
AGATGGAAAAAGAAACCGACAGGAAATATTGCTTATTTCAAACAAAATTAATACTTGACAGAAAATTATATAATGTTTAT
AATAGTATTACAGACTTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MFKEFHVKTTGRVQLIDITDKVRDCLNEAGIENGILTVFTPHTTAAITINENADPDVKRDIISEINKVIPFDDNYKHLEG
NSAAHIKSSLFGVSESIIINNKRMRLGRWQGIYFCEFDGPRRRKVYVQIIGK

Sequences:

>Translated_132_residues
MFKEFHVKTTGRVQLIDITDKVRDCLNEAGIENGILTVFTPHTTAAITINENADPDVKRDIISEINKVIPFDDNYKHLEG
NSAAHIKSSLFGVSESIIINNKRMRLGRWQGIYFCEFDGPRRRKVYVQIIGK
>Mature_132_residues
MFKEFHVKTTGRVQLIDITDKVRDCLNEAGIENGILTVFTPHTTAAITINENADPDVKRDIISEINKVIPFDDNYKHLEG
NSAAHIKSSLFGVSESIIINNKRMRLGRWQGIYFCEFDGPRRRKVYVQIIGK

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=112, Percent_Identity=35.7142857142857, Blast_Score=70, Evalue=3e-14,
Organism=Drosophila melanogaster, GI221476589, Length=94, Percent_Identity=37.2340425531915, Blast_Score=73, Evalue=4e-14,
Organism=Drosophila melanogaster, GI221476594, Length=94, Percent_Identity=37.2340425531915, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15063; Mature: 15063

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKEFHVKTTGRVQLIDITDKVRDCLNEAGIENGILTVFTPHTTAAITINENADPDVKRD
CCCEEEEECCCCEEEEECHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCHHHHH
IISEINKVIPFDDNYKHLEGNSAAHIKSSLFGVSESIIINNKRMRLGRWQGIYFCEFDGP
HHHHHHHCCCCCCCCCEECCCCCHHHHHHHCCCCCEEEEECCEEEEECCCEEEEEECCCC
RRRKVYVQIIGK
CCEEEEEEEECC
>Mature Secondary Structure
MFKEFHVKTTGRVQLIDITDKVRDCLNEAGIENGILTVFTPHTTAAITINENADPDVKRD
CCCEEEEECCCCEEEEECHHHHHHHHHHCCCCCCEEEEECCCCEEEEEECCCCCCHHHHH
IISEINKVIPFDDNYKHLEGNSAAHIKSSLFGVSESIIINNKRMRLGRWQGIYFCEFDGP
HHHHHHHCCCCCCCCCEECCCCCHHHHHHHCCCCCEEEEECCEEEEECCCEEEEEECCCC
RRRKVYVQIIGK
CCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]