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The map label for this gene is ydcI [H]

Identifier: 220930899

GI number: 220930899

Start: 56965

End: 59133

Strand: Direct

Name: ydcI [H]

Synonym: Hore_00510

Alternate gene names: 220930899

Gene position: 56965-59133 (Clockwise)

Preceding gene: 220930898

Following gene: 220930900

Centisome position: 2.21

GC content: 41.03

Gene sequence:

>2169_bases
ATGAATCAAAGAATAATTGGACAAATCTCTAAAGAATTAAAACTGAAAACTAACCAGGTAAAAGGAACGGTTAAACTTCT
TGATGAAGGTAATACCGTTCCTTTTATTGCGCGTTACCGTAAAGAAGTGACTGGAGGACTTGATGAAGCACAGATAAGGA
CTATTGAAGAAAGACTGGAATACCTCCGCAGTCTTCAAAAGCGGAAGGAAGAAGTTATAAGGCTGATTGAAGAGCAGGGA
AAGTTAACTCCGGAACTTGAAGAAAAGATTAAAAAAGCTTCCATTTTACAGGAAGTAGAAGATCTCTACAGGCCTTATAA
GCAGAAGCGGCGGACCCGGGCTACCAGGGCCAAAGAAAAAGGCCTTGAACCCCTGGCTAAGTTAATGTGGACACAAGAAC
TTACTTCTGGTAATCCTGAAGATATAGGTAAGGAATATATCAACCCCGAAGTTGAACTGGAGAGCATTGAAGATGTTTAT
CAGGGAGCCAGGGATATTATAGCAGAATGGGTTTCAGATGATGCCGGAATTAGAAAAGAAATCAGGAAAATAACCTTTAA
GCAGGGAGTTATTCAGAGCACCTGTAAAGATAGTGAGACCGATGATGAAGGCAAATATGAGATGTATTATGATTACAGGG
AACCTGTCAGTAAAATACCACCCCACCGGGTTCTGGCTATTAACCGGGGGGAGAAAGATGAAGTGCTCCAGGTTAAGGTT
TTAGCTCCTGAAGAAGATATTATAGAATTAATCAAGGATAGGGTGGTTAACAATCCTGAAAGTATATTTTACAATGATAT
AATTGAAGCTATTAAAGATGGATATAAAAGGTTAATTGCTCCTTCCATTGAAAGGGAGGTTAGAAATAGTCTTACTGAAA
AAGCAGAAGAGCATGCCATAAATATTTTTTCTAAAAACCTTCGCAATCTGCTTTTGCAGCCACCACTCAGAGGTCATACT
GTTATGGGAATTGACCCTGCCTATAGAACGGGTTGTAAAGTCTGTGTTGTGGACCCGACCGGGAGGTTACTGGATACAGC
AACTATTTACCCCCATCCGCCCCAGAGCCGGACAGGTGAAGCTAAAAAGGTTGTTAAAGGTTTGATAAATGAATACCAGG
TTACTACGATTGCTATCGGGAATGGGACAGCATCCCGGGAAACCGAGTTTATGGTTGCTGATATAATTAAGGAACTTAAA
AACACTCAGGTTAACTATGTAATAGTAAATGAAGCCGGGGCTTCAGTTTATTCTGCATCCAAACTGGCCAGAAAAGAGTT
TCCTGAACTCGATGTAGCCATGAGAGGAGCCATTTCCATTGCGAGGCGGTTACAGGACCCCCTGGCTGAGCTTGTTAAAA
TAGATCCCAAATCCATTGGGGTTGGTCTTTATCAGCATGATGTTAATCAAAAAAACCTTGAAAAATCCCTCGGTAATGTA
GTGGAATCGGCCGTTAATTATGTTGGAGTTGATTTAAATACAGCTTCGCCATCCCTTTTAAAATATGTGGCCGGTATTAA
TAGCCGGGTGGCGTCAAATATTGTTAAATACCGTGAGGAAAATGGTAAATTTGAAACCAGGGATGAATTATTAAAGGTGA
AGGGTCTGGGTAAAAAAACATTTACCCAGGCAGCTGGTTTTTTAAGAATACCGGATGGAACAAATCCCCTGGATAATACC
CCAATCCATCCTGAATCCTATCAGGCCGCTAAAGGTCTATTACAGGATGTCGGGTTTAAACTGTTAGATATTACTGATAA
GGAAAAGCTTAAGGAAGTGCGTGAAGAGCTGGACTCCATCAATATAAAATCCAGGGCTGAAAAACTGGAGACAGGAATAC
CAACTTTAAAAGATATTGTAGATGCTTTAAAAAAACCGGGACGCGACCCGCGTGATGAATTACCTAAACCTATCTTCAGG
TCTGATGTATTGAAAATGGAAGATTTAGAGGCTGGCATGCTCCTTCAGGGTACGGTCCGGAATGTAGTGGATTTTGGTGC
TTTTGTTGATATTGGGGTCAAGGTGGACGGGCTTGTTCATATTTCTGAAATGAGTCATGATTATGTAGATGATCCCCTCA
AGGTGGTACAGGTAGGGGATACTGTAAAGGTTAAAATATTAGAGGTAGATGAGAGGCGAAACAGGATTTCCCTGAGTATG
AAGTTGTAG

Upstream 100 bases:

>100_bases
ACTCGGGTTGGTTAAGCCTGGGGAATTACTTTTAATACCTATAGAAGAAGAATGATCTTTTAAATAGAAAAGGAATGATC
TATATAAAGGAGTGGCAGTG

Downstream 100 bases:

>100_bases
GGTTGACATTATATCTAATGTATAATATAATAAAACAAATATTAATTAAATCTGAGGAGGAATTTTTTTAGAATGTCCAT
CGATGTTGGTAGTACTGTTG

Product: RNA binding S1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 722; Mature: 722

Protein sequence:

>722_residues
MNQRIIGQISKELKLKTNQVKGTVKLLDEGNTVPFIARYRKEVTGGLDEAQIRTIEERLEYLRSLQKRKEEVIRLIEEQG
KLTPELEEKIKKASILQEVEDLYRPYKQKRRTRATRAKEKGLEPLAKLMWTQELTSGNPEDIGKEYINPEVELESIEDVY
QGARDIIAEWVSDDAGIRKEIRKITFKQGVIQSTCKDSETDDEGKYEMYYDYREPVSKIPPHRVLAINRGEKDEVLQVKV
LAPEEDIIELIKDRVVNNPESIFYNDIIEAIKDGYKRLIAPSIEREVRNSLTEKAEEHAINIFSKNLRNLLLQPPLRGHT
VMGIDPAYRTGCKVCVVDPTGRLLDTATIYPHPPQSRTGEAKKVVKGLINEYQVTTIAIGNGTASRETEFMVADIIKELK
NTQVNYVIVNEAGASVYSASKLARKEFPELDVAMRGAISIARRLQDPLAELVKIDPKSIGVGLYQHDVNQKNLEKSLGNV
VESAVNYVGVDLNTASPSLLKYVAGINSRVASNIVKYREENGKFETRDELLKVKGLGKKTFTQAAGFLRIPDGTNPLDNT
PIHPESYQAAKGLLQDVGFKLLDITDKEKLKEVREELDSINIKSRAEKLETGIPTLKDIVDALKKPGRDPRDELPKPIFR
SDVLKMEDLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKILEVDERRNRISLSM
KL

Sequences:

>Translated_722_residues
MNQRIIGQISKELKLKTNQVKGTVKLLDEGNTVPFIARYRKEVTGGLDEAQIRTIEERLEYLRSLQKRKEEVIRLIEEQG
KLTPELEEKIKKASILQEVEDLYRPYKQKRRTRATRAKEKGLEPLAKLMWTQELTSGNPEDIGKEYINPEVELESIEDVY
QGARDIIAEWVSDDAGIRKEIRKITFKQGVIQSTCKDSETDDEGKYEMYYDYREPVSKIPPHRVLAINRGEKDEVLQVKV
LAPEEDIIELIKDRVVNNPESIFYNDIIEAIKDGYKRLIAPSIEREVRNSLTEKAEEHAINIFSKNLRNLLLQPPLRGHT
VMGIDPAYRTGCKVCVVDPTGRLLDTATIYPHPPQSRTGEAKKVVKGLINEYQVTTIAIGNGTASRETEFMVADIIKELK
NTQVNYVIVNEAGASVYSASKLARKEFPELDVAMRGAISIARRLQDPLAELVKIDPKSIGVGLYQHDVNQKNLEKSLGNV
VESAVNYVGVDLNTASPSLLKYVAGINSRVASNIVKYREENGKFETRDELLKVKGLGKKTFTQAAGFLRIPDGTNPLDNT
PIHPESYQAAKGLLQDVGFKLLDITDKEKLKEVREELDSINIKSRAEKLETGIPTLKDIVDALKKPGRDPRDELPKPIFR
SDVLKMEDLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKILEVDERRNRISLSM
KL
>Mature_722_residues
MNQRIIGQISKELKLKTNQVKGTVKLLDEGNTVPFIARYRKEVTGGLDEAQIRTIEERLEYLRSLQKRKEEVIRLIEEQG
KLTPELEEKIKKASILQEVEDLYRPYKQKRRTRATRAKEKGLEPLAKLMWTQELTSGNPEDIGKEYINPEVELESIEDVY
QGARDIIAEWVSDDAGIRKEIRKITFKQGVIQSTCKDSETDDEGKYEMYYDYREPVSKIPPHRVLAINRGEKDEVLQVKV
LAPEEDIIELIKDRVVNNPESIFYNDIIEAIKDGYKRLIAPSIEREVRNSLTEKAEEHAINIFSKNLRNLLLQPPLRGHT
VMGIDPAYRTGCKVCVVDPTGRLLDTATIYPHPPQSRTGEAKKVVKGLINEYQVTTIAIGNGTASRETEFMVADIIKELK
NTQVNYVIVNEAGASVYSASKLARKEFPELDVAMRGAISIARRLQDPLAELVKIDPKSIGVGLYQHDVNQKNLEKSLGNV
VESAVNYVGVDLNTASPSLLKYVAGINSRVASNIVKYREENGKFETRDELLKVKGLGKKTFTQAAGFLRIPDGTNPLDNT
PIHPESYQAAKGLLQDVGFKLLDITDKEKLKEVREELDSINIKSRAEKLETGIPTLKDIVDALKKPGRDPRDELPKPIFR
SDVLKMEDLEAGMLLQGTVRNVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKILEVDERRNRISLSM
KL

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=801, Percent_Identity=36.5792759051186, Blast_Score=466, Evalue=1e-131,
Organism=Homo sapiens, GI27597090, Length=518, Percent_Identity=24.9034749034749, Blast_Score=109, Evalue=1e-23,
Organism=Escherichia coli, GI87082262, Length=735, Percent_Identity=47.0748299319728, Blast_Score=627, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=76, Percent_Identity=47.3684210526316, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI145693187, Length=74, Percent_Identity=47.2972972972973, Blast_Score=63, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=758, Percent_Identity=31.2664907651715, Blast_Score=290, Evalue=1e-78,
Organism=Caenorhabditis elegans, GI17552892, Length=614, Percent_Identity=22.8013029315961, Blast_Score=85, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6321552, Length=248, Percent_Identity=28.2258064516129, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI62484314, Length=745, Percent_Identity=34.6308724832215, Blast_Score=422, Evalue=1e-118,
Organism=Drosophila melanogaster, GI24640080, Length=595, Percent_Identity=22.8571428571429, Blast_Score=96, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81458; Mature: 81458

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQRIIGQISKELKLKTNQVKGTVKLLDEGNTVPFIARYRKEVTGGLDEAQIRTIEERLE
CCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
YLRSLQKRKEEVIRLIEEQGKLTPELEEKIKKASILQEVEDLYRPYKQKRRTRATRAKEK
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLEPLAKLMWTQELTSGNPEDIGKEYINPEVELESIEDVYQGARDIIAEWVSDDAGIRKE
CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IRKITFKQGVIQSTCKDSETDDEGKYEMYYDYREPVSKIPPHRVLAINRGEKDEVLQVKV
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCCEEEEECCCCCCCEEEEEE
LAPEEDIIELIKDRVVNNPESIFYNDIIEAIKDGYKRLIAPSIEREVRNSLTEKAEEHAI
ECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
NIFSKNLRNLLLQPPLRGHTVMGIDPAYRTGCKVCVVDPTGRLLDTATIYPHPPQSRTGE
HHHHHHHHHHHCCCCCCCCEEEECCHHHHCCCEEEEECCCCCCEECCCCCCCCCCCCCCH
AKKVVKGLINEYQVTTIAIGNGTASRETEFMVADIIKELKNTQVNYVIVNEAGASVYSAS
HHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
KLARKEFPELDVAMRGAISIARRLQDPLAELVKIDPKSIGVGLYQHDVNQKNLEKSLGNV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCCHHHHHHHHHHH
VESAVNYVGVDLNTASPSLLKYVAGINSRVASNIVKYREENGKFETRDELLKVKGLGKKT
HHHHHHHEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHH
FTQAAGFLRIPDGTNPLDNTPIHPESYQAAKGLLQDVGFKLLDITDKEKLKEVREELDSI
HHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCC
NIKSRAEKLETGIPTLKDIVDALKKPGRDPRDELPKPIFRSDVLKMEDLEAGMLLQGTVR
CHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCHHHHHH
NVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKILEVDERRNRISLSM
HHHHHHHHEEECEEECCEEEEHHHCCHHCCCCHHEEEECCCEEEEEEEECCCCCEEEEEE
KL
CC
>Mature Secondary Structure
MNQRIIGQISKELKLKTNQVKGTVKLLDEGNTVPFIARYRKEVTGGLDEAQIRTIEERLE
CCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH
YLRSLQKRKEEVIRLIEEQGKLTPELEEKIKKASILQEVEDLYRPYKQKRRTRATRAKEK
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLEPLAKLMWTQELTSGNPEDIGKEYINPEVELESIEDVYQGARDIIAEWVSDDAGIRKE
CHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IRKITFKQGVIQSTCKDSETDDEGKYEMYYDYREPVSKIPPHRVLAINRGEKDEVLQVKV
HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHCCCCEEEEECCCCCCCEEEEEE
LAPEEDIIELIKDRVVNNPESIFYNDIIEAIKDGYKRLIAPSIEREVRNSLTEKAEEHAI
ECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
NIFSKNLRNLLLQPPLRGHTVMGIDPAYRTGCKVCVVDPTGRLLDTATIYPHPPQSRTGE
HHHHHHHHHHHCCCCCCCCEEEECCHHHHCCCEEEEECCCCCCEECCCCCCCCCCCCCCH
AKKVVKGLINEYQVTTIAIGNGTASRETEFMVADIIKELKNTQVNYVIVNEAGASVYSAS
HHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
KLARKEFPELDVAMRGAISIARRLQDPLAELVKIDPKSIGVGLYQHDVNQKNLEKSLGNV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHCCCHHHHHHHHHHH
VESAVNYVGVDLNTASPSLLKYVAGINSRVASNIVKYREENGKFETRDELLKVKGLGKKT
HHHHHHHEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHH
FTQAAGFLRIPDGTNPLDNTPIHPESYQAAKGLLQDVGFKLLDITDKEKLKEVREELDSI
HHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHCC
NIKSRAEKLETGIPTLKDIVDALKKPGRDPRDELPKPIFRSDVLKMEDLEAGMLLQGTVR
CHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCHHHHHH
NVVDFGAFVDIGVKVDGLVHISEMSHDYVDDPLKVVQVGDTVKVKILEVDERRNRISLSM
HHHHHHHHEEECEEECCEEEEHHHCCHHCCCCHHEEEECCCEEEEEEEECCCCCEEEEEE
KL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]