Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 221230944

GI number: 221230944

Start: 3264850

End: 3265431

Strand: Reverse

Name: jag [H]

Synonym: MLBr_02709

Alternate gene names: 221230944

Gene position: 3265431-3264850 (Counterclockwise)

Preceding gene: 221230945

Following gene: 221230943

Centisome position: 99.92

GC content: 50.0

Gene sequence:

>582_bases
ATGACAGATGTTGAAACTACCGAGTGTGATGTTCACCAGTCAGATACACAAACGTTGATGGAAGATCTCTTGGATGATGA
GACGACGGCAGATGCCAACGCTAATAAGTCAAACGATTTTGAGGAACGGTTGGTTGCTGAGGGTGAAATTGCTGGTGATT
ATCTGGAAGAGTTGTTGGACTTGTTGGACTTTGATGGTGACATTGATCTAGATGTTGAGGGAACTCGGGCAGTAGTCAGC
ATCGACGGCGGTGATGATTTGAATAAATTAGTTGGGCGTACAGGCGAAGTGCTCGATGCTTTGCAGGAACTTACTCGGCT
AGCCGTACACCAGAAAACTGGTGTACGGAGCCGGTTGATGCTTGATATTGCAGGATGGCGACGGCGGCGCCGGGAAGAAT
TGGTTGCGTTGGGCGACAGGATGGCGTGGCGGGTGCTCGCAACCGGCGAGTGTGAAAAGCTCACTCCGATGACACCGTTT
GAACGAAAGATCGTGCATGATGCTATTGCGGCAGTACCTGGAGTGCACAGTGAAAGTGAAGGTATGGGAACAGCACGGCG
GGTCATTATTTTACGTGATTAG

Upstream 100 bases:

>100_bases
AAAGAGACGTAAGCGCTGACGAGGTGTCAAAATTTTTACTGGGTCGAGTTCGTTGAATGACTTAAGAGGGCATGGACTTG
TGGATTGAGAAAGAGAAGCC

Downstream 100 bases:

>100_bases
CGGCGATTGTAGATATGGTGGAGTTGAGTGTAGCGGACGGTCACAACTGGCAGACTTTGAACGTTTAGAGGGTGTTTCAC
GTGAAACATGTCGGTTCTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTDVETTECDVHQSDTQTLMEDLLDDETTADANANKSNDFEERLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGTRAVVS
IDGGDDLNKLVGRTGEVLDALQELTRLAVHQKTGVRSRLMLDIAGWRRRRREELVALGDRMAWRVLATGECEKLTPMTPF
ERKIVHDAIAAVPGVHSESEGMGTARRVIILRD

Sequences:

>Translated_193_residues
MTDVETTECDVHQSDTQTLMEDLLDDETTADANANKSNDFEERLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGTRAVVS
IDGGDDLNKLVGRTGEVLDALQELTRLAVHQKTGVRSRLMLDIAGWRRRRREELVALGDRMAWRVLATGECEKLTPMTPF
ERKIVHDAIAAVPGVHSESEGMGTARRVIILRD
>Mature_192_residues
TDVETTECDVHQSDTQTLMEDLLDDETTADANANKSNDFEERLVAEGEIAGDYLEELLDLLDFDGDIDLDVEGTRAVVSI
DGGDDLNKLVGRTGEVLDALQELTRLAVHQKTGVRSRLMLDIAGWRRRRREELVALGDRMAWRVLATGECEKLTPMTPFE
RKIVHDAIAAVPGVHSESEGMGTARRVIILRD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 21449; Mature: 21318

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVETTECDVHQSDTQTLMEDLLDDETTADANANKSNDFEERLVAEGEIAGDYLEELLD
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
LLDFDGDIDLDVEGTRAVVSIDGGDDLNKLVGRTGEVLDALQELTRLAVHQKTGVRSRLM
HHCCCCCEEEEECCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
LDIAGWRRRRREELVALGDRMAWRVLATGECEKLTPMTPFERKIVHDAIAAVPGVHSESE
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
GMGTARRVIILRD
CCCCEEEEEEEEC
>Mature Secondary Structure 
TDVETTECDVHQSDTQTLMEDLLDDETTADANANKSNDFEERLVAEGEIAGDYLEELLD
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHH
LLDFDGDIDLDVEGTRAVVSIDGGDDLNKLVGRTGEVLDALQELTRLAVHQKTGVRSRLM
HHCCCCCEEEEECCCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
LDIAGWRRRRREELVALGDRMAWRVLATGECEKLTPMTPFERKIVHDAIAAVPGVHSESE
HHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
GMGTARRVIILRD
CCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]