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The map label for this gene is sodC

Identifier: 221230512

GI number: 221230512

Start: 2310696

End: 2311418

Strand: Reverse

Name: sodC

Synonym: MLBr_01925

Alternate gene names: 221230512

Gene position: 2311418-2310696 (Counterclockwise)

Preceding gene: 221230514

Following gene: 221230509

Centisome position: 70.73

GC content: 61.55

Gene sequence:

>723_bases
ATGTCTAAACTCGCCGGTCACCGCAATGTCGCTGCCGTTACCAGGTCAGCGCTGTCCCTGTCGTTTGTGGCCGCCTGCGT
CGCACTGTTGAGCGCGTGTATCCAGAACCAACCCCCAGCGACCTTGCCGGGTACCACTCCAACGGTTTGGACTGGATCAC
CCGCGCCGTCAGGAATGTTGGGTGCCGAGGCCGAATCGATGGGGCCACCGAACATAATCACTCGTCTGAATGCTCCCGAC
GGCACCCAGGTCGCTACGGCGAAGTTCGAGTTCAACAACGGATTTGCCACCATCACGATCGCGACGACCGGCGTAGGTCA
TCTGGCTCCGGGATTCCACGGAGTGCACATTCACAAGGTGGGTAAATGTGAGCCCAGCTCAGCCGGGCCAACCGGTGGCG
CGCCCGGCGACTTCTTATCCGCCGGCGGGCATTTCCAGGTGCCTGGACACACCGTCGAGCCTGCCAGCGGCAATCTTACC
TCACTTCAAGTGCGTAAAGACGGTATCGGGACGCTGGTGACCACCACGGACGCGTTCACCATGAATGATCTACTAGCCGG
CCAGAAAACCGCCATCATCATTCACGCAGGTGCCGACAACTTCGGCAACATTCCGCCGGAGCGCTACAGCCAGGTCAACG
GCACACCGGGTCCCGACGCGACGACGATCAGCACTGGTGACGCCGGCAAACGGGTAGCGTGCGGTGTCATCGGCGCCGAC
TAG

Upstream 100 bases:

>100_bases
CAGCCGCCGGGTGTCATCGTCTTGGTGACGAGCTGAGACCTTATTGAGGGGCTCTTGCGGCCCGCTGCCAATGTCGGGAA
CGCCAGGCTAGGCTCTCGCT

Downstream 100 bases:

>100_bases
CTCACCGGTCAACAGGATGCGTGCCCATATCGACTTCGGTCCGCTCACCGCGGCCGACTATTAGTGTGGAGTCGGAGTTT
GCGCTCGTCGATGCGCAGAC

Product: superoxide dismutase precursor (Cu-Zn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSKLAGHRNVAAVTRSALSLSFVAACVALLSACIQNQPPATLPGTTPTVWTGSPAPSGMLGAEAESMGPPNIITRLNAPD
GTQVATAKFEFNNGFATITIATTGVGHLAPGFHGVHIHKVGKCEPSSAGPTGGAPGDFLSAGGHFQVPGHTVEPASGNLT
SLQVRKDGIGTLVTTTDAFTMNDLLAGQKTAIIIHAGADNFGNIPPERYSQVNGTPGPDATTISTGDAGKRVACGVIGAD

Sequences:

>Translated_240_residues
MSKLAGHRNVAAVTRSALSLSFVAACVALLSACIQNQPPATLPGTTPTVWTGSPAPSGMLGAEAESMGPPNIITRLNAPD
GTQVATAKFEFNNGFATITIATTGVGHLAPGFHGVHIHKVGKCEPSSAGPTGGAPGDFLSAGGHFQVPGHTVEPASGNLT
SLQVRKDGIGTLVTTTDAFTMNDLLAGQKTAIIIHAGADNFGNIPPERYSQVNGTPGPDATTISTGDAGKRVACGVIGAD
>Mature_239_residues
SKLAGHRNVAAVTRSALSLSFVAACVALLSACIQNQPPATLPGTTPTVWTGSPAPSGMLGAEAESMGPPNIITRLNAPDG
TQVATAKFEFNNGFATITIATTGVGHLAPGFHGVHIHKVGKCEPSSAGPTGGAPGDFLSAGGHFQVPGHTVEPASGNLTS
LQVRKDGIGTLVTTTDAFTMNDLLAGQKTAIIIHAGADNFGNIPPERYSQVNGTPGPDATTISTGDAGKRVACGVIGAD

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems. May play a role in favoring mycobacterial survival in phagocytes

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SODC_MYCLE (Q9CBI6)

Other databases:

- EMBL:   AL583923
- PIR:   H87149
- RefSeq:   NP_302298.1
- ProteinModelPortal:   Q9CBI6
- SMR:   Q9CBI6
- EnsemblBacteria:   EBMYCT00000028567
- GeneID:   910108
- GenomeReviews:   AL450380_GR
- KEGG:   mle:ML1925
- NMPDR:   fig|272631.1.peg.1170
- Leproma:   ML1925
- GeneTree:   EBGT00050000014902
- HOGENOM:   HBG609879
- OMA:   RYNQTNG
- ProtClustDB:   CLSK790516
- BioCyc:   MLEP272631:ML1925-MONOMER
- BRENDA:   1.15.1.1
- InterPro:   IPR018152
- InterPro:   IPR001424
- Gene3D:   G3DSA:2.60.40.200
- PANTHER:   PTHR10003

Pfam domain/function: PF00080 Sod_Cu; SSF49329 SOD_Cu_Zn

EC number: =1.15.1.1

Molecular weight: Translated: 24087; Mature: 23956

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00087 SOD_CU_ZN_1; PS00332 SOD_CU_ZN_2; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLAGHRNVAAVTRSALSLSFVAACVALLSACIQNQPPATLPGTTPTVWTGSPAPSGML
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCC
GAEAESMGPPNIITRLNAPDGTQVATAKFEFNNGFATITIATTGVGHLAPGFHGVHIHKV
CCCHHHCCCCCEEEEECCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEE
GKCEPSSAGPTGGAPGDFLSAGGHFQVPGHTVEPASGNLTSLQVRKDGIGTLVTTTDAFT
CCCCCCCCCCCCCCCCHHHCCCCEEECCCCEECCCCCCEEEEEEECCCCCEEEEECCCEE
MNDLLAGQKTAIIIHAGADNFGNIPPERYSQVNGTPGPDATTISTGDAGKRVACGVIGAD
HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCC
>Mature Secondary Structure 
SKLAGHRNVAAVTRSALSLSFVAACVALLSACIQNQPPATLPGTTPTVWTGSPAPSGML
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCC
GAEAESMGPPNIITRLNAPDGTQVATAKFEFNNGFATITIATTGVGHLAPGFHGVHIHKV
CCCHHHCCCCCEEEEECCCCCCEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEE
GKCEPSSAGPTGGAPGDFLSAGGHFQVPGHTVEPASGNLTSLQVRKDGIGTLVTTTDAFT
CCCCCCCCCCCCCCCCHHHCCCCEEECCCCEECCCCCCEEEEEEECCCCCEEEEECCCEE
MNDLLAGQKTAIIIHAGADNFGNIPPERYSQVNGTPGPDATTISTGDAGKRVACGVIGAD
HHHHHCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11234002