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The map label for this gene is yliC [C]

Identifier: 221230034

GI number: 221230034

Start: 1304152

End: 1305129

Strand: Reverse

Name: yliC [C]

Synonym: MLBr_01124

Alternate gene names: 221230034

Gene position: 1305129-1304152 (Counterclockwise)

Preceding gene: 221230056

Following gene: 221230033

Centisome position: 39.94

GC content: 60.74

Gene sequence:

>978_bases
ATGATGCGCTTTTTGGCGCGCCGATTACTCAACTACGTCGTGCTGCTAGCGCTGGCATCGTTTCTGACCTACTGCCTAAC
TTCAATGGCTTTCGCGCCGCTGGACAGCCTGCTGCAGCGCAGTCCCCACCCGCCGCAAGCCATGGTTGACGCCAAGGCCC
ATGCACTCGGCTTGGACAAGCCCATACCGATTCGCTACGCAAACTGGGCGTCGCACGCCATACGCGGCGATTTCGGCACC
ACCATCACCGGACAACCGGTGGGCTCTACGCTGGGCCGTCGTGTTGGAGTCAGCCTGCGGTTGCTGATCATTGGCTCCTT
GACAGGCACGGTACTGGGCGTGACGGCCGGAGCATGGGGCGCTATCCGCCAGTACCAACTCAGCGACCGCGTGGTCACCT
TACTGGCGTTGCTGGTGCTCAGCACACCGACATTCGTGATCGCCAACCTGTTGATCTTAAGCGCGCTGCGGGTGAACTGG
GCCTTTGGCATCCAACTCTTCGACTACACCGGAGAAACGTCGCCAGGCGTCTACGGTGGGGCGTGGGCTCACGTAATCGA
CCGGTTGCGGCATTTGATCCTACCCACGCTAACGCTGGCGCTGGTTGGTGCCGCTGGATACAGCCGATATCAGCGCAACG
CGATGCTCGACGTCCTCAGCCAGGATTTCATTCGGGCGGCCCGCGCCAAAGGACTCACTCGTCGACGCGCACTGCTGAAA
CACGGATTGCGCACCGCACTAATCCCGATGGCTACCCTGTTCGCTTATGGGGTCGCCGGGCTGGTCACCGGAGCCTTGTT
CGTCGAGAAGATCTTCGGCTGGCACGGCATGGGTGAATGGATGGTGCAGGGTGTCGCTACTCAGGACACCAATATCATCG
CGGCCATCACGATCTTCTTCGGCACGGTCATACTGCTAGCCGGCCTGCTCTCCGATGTCATCTATGCAGCACTTGATCCG
CGGGTCCGAGTTTCGTGA

Upstream 100 bases:

>100_bases
GCTGCGCGACGCCGGCCACTACAGCAGTGCTGTGCGATGTCACTATATTCCTGTTAACTCGCTAATCTGTACCAATGCGA
CACGAGCGGGATGATCAGCC

Downstream 100 bases:

>100_bases
CCCTCACCGAGGGCCTATCCATTTCGGAGAAAACAAATTTCGCTTCTCGGAAAACCTTGGTGCTGCGCCGGTTTGCGCAC
AACCGAACCGCGTCGGTGTC

Product: putative binding-protein dependent transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MMRFLARRLLNYVVLLALASFLTYCLTSMAFAPLDSLLQRSPHPPQAMVDAKAHALGLDKPIPIRYANWASHAIRGDFGT
TITGQPVGSTLGRRVGVSLRLLIIGSLTGTVLGVTAGAWGAIRQYQLSDRVVTLLALLVLSTPTFVIANLLILSALRVNW
AFGIQLFDYTGETSPGVYGGAWAHVIDRLRHLILPTLTLALVGAAGYSRYQRNAMLDVLSQDFIRAARAKGLTRRRALLK
HGLRTALIPMATLFAYGVAGLVTGALFVEKIFGWHGMGEWMVQGVATQDTNIIAAITIFFGTVILLAGLLSDVIYAALDP
RVRVS

Sequences:

>Translated_325_residues
MMRFLARRLLNYVVLLALASFLTYCLTSMAFAPLDSLLQRSPHPPQAMVDAKAHALGLDKPIPIRYANWASHAIRGDFGT
TITGQPVGSTLGRRVGVSLRLLIIGSLTGTVLGVTAGAWGAIRQYQLSDRVVTLLALLVLSTPTFVIANLLILSALRVNW
AFGIQLFDYTGETSPGVYGGAWAHVIDRLRHLILPTLTLALVGAAGYSRYQRNAMLDVLSQDFIRAARAKGLTRRRALLK
HGLRTALIPMATLFAYGVAGLVTGALFVEKIFGWHGMGEWMVQGVATQDTNIIAAITIFFGTVILLAGLLSDVIYAALDP
RVRVS
>Mature_325_residues
MMRFLARRLLNYVVLLALASFLTYCLTSMAFAPLDSLLQRSPHPPQAMVDAKAHALGLDKPIPIRYANWASHAIRGDFGT
TITGQPVGSTLGRRVGVSLRLLIIGSLTGTVLGVTAGAWGAIRQYQLSDRVVTLLALLVLSTPTFVIANLLILSALRVNW
AFGIQLFDYTGETSPGVYGGAWAHVIDRLRHLILPTLTLALVGAAGYSRYQRNAMLDVLSQDFIRAARAKGLTRRRALLK
HGLRTALIPMATLFAYGVAGLVTGALFVEKIFGWHGMGEWMVQGVATQDTNIIAAITIFFGTVILLAGLLSDVIYAALDP
RVRVS

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yliabcd; Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=325, Percent_Identity=31.6923076923077, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI1787497, Length=328, Percent_Identity=30.7926829268293, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1789965, Length=349, Percent_Identity=30.0859598853868, Blast_Score=144, Evalue=5e-36,
Organism=Escherichia coli, GI1789888, Length=330, Percent_Identity=29.6969696969697, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787550, Length=269, Percent_Identity=27.5092936802974, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787761, Length=295, Percent_Identity=30.8474576271186, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788504, Length=283, Percent_Identity=27.5618374558304, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35182; Mature: 35182

Theoretical pI: Translated: 10.90; Mature: 10.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRFLARRLLNYVVLLALASFLTYCLTSMAFAPLDSLLQRSPHPPQAMVDAKAHALGLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
PIPIRYANWASHAIRGDFGTTITGQPVGSTLGRRVGVSLRLLIIGSLTGTVLGVTAGAWG
CCCEEECCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHH
AIRQYQLSDRVVTLLALLVLSTPTFVIANLLILSALRVNWAFGIQLFDYTGETSPGVYGG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCH
AWAHVIDRLRHLILPTLTLALVGAAGYSRYQRNAMLDVLSQDFIRAARAKGLTRRRALLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLRTALIPMATLFAYGVAGLVTGALFVEKIFGWHGMGEWMVQGVATQDTNIIAAITIFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
GTVILLAGLLSDVIYAALDPRVRVS
HHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMRFLARRLLNYVVLLALASFLTYCLTSMAFAPLDSLLQRSPHPPQAMVDAKAHALGLDK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
PIPIRYANWASHAIRGDFGTTITGQPVGSTLGRRVGVSLRLLIIGSLTGTVLGVTAGAWG
CCCEEECCHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHH
AIRQYQLSDRVVTLLALLVLSTPTFVIANLLILSALRVNWAFGIQLFDYTGETSPGVYGG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCCH
AWAHVIDRLRHLILPTLTLALVGAAGYSRYQRNAMLDVLSQDFIRAARAKGLTRRRALLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGLRTALIPMATLFAYGVAGLVTGALFVEKIFGWHGMGEWMVQGVATQDTNIIAAITIFF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHH
GTVILLAGLLSDVIYAALDPRVRVS
HHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]