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The map label for this gene is yddS [C]

Identifier: 221230031

GI number: 221230031

Start: 1299760

End: 1301433

Strand: Reverse

Name: yddS [C]

Synonym: MLBr_01121

Alternate gene names: 221230031

Gene position: 1301433-1299760 (Counterclockwise)

Preceding gene: 221230032

Following gene: 221230028

Centisome position: 39.82

GC content: 60.04

Gene sequence:

>1674_bases
GTGATTATGCTTAGCAGGATCGTCGCGGCGTTGCTGGTGGTCGGCCTGATCCTGACCGGATGCTCCGCAAGCAACCGCCT
TGTCCCCTCTGCAGCAAGTAACGCTGCGCTCGGCAAAACCAGCGATATCAACCCCCAGGATCCGGCCACGCTAAAAGATG
GCGGAAACTTGCGGCTGGCACTGACCGACTTCCCGGCAAACTTCAACATCCTGCACATCGATGGCAACAACGCCGAGGTC
ACCTCAATGATGAAGGCCACCATGCCACGAGCGTTCATCATCGGTACTGACGGTTCGACGACTGTCGACACCAACTACTT
CACCAGCATCAAACTCACTAGCACTTCCCCGCAAGTGGTCACCTACACCATCAATCCAAAGGCGGTCTGGTCCGACGGCA
CGCCGATCACTTGGAGAGACATCGACCGCCAGATCCACGCCAATAGCGGCAAGAATAAAGCATTCGAGATCGCCGGAACC
AACGGCTGCGAGCGAGTAGCATCAATACGCCCCGGCGCCAACGATCGGCAGGCCATCGTGACCTTCGCCCAGCCATACGC
CGAATGGCGCGGCATGTTCGCCGGTAATGGCATGCTGCTGCCCGCCACAATGACCGCCACACCCGAAGCGTTCAACAAGG
GCCAGCTCGACAGACCAGGCCCGTCAGCCGGTCCGTTTATTGTGTCATCACTGGATCGAACCACACAACGAATCGTGTTG
ACCCACAACCCGAAATGGTGGGGGACACCACCCCGCCTGGACAGCATTACCTACTTGGTCCTCGATGACGCCGCACGGCT
ACCAGCGTTGCAAAACAACACGATCGATGCGACCGGAGTCGGCACGCTAGACCAGCTGACCACCGCACAGCGCACCAACG
GCATCTCTATCCGGCGCACCCCGGCCCCCCGCTGGTCTCACTTCACCTTCAACGGAGCCGTTGGGTCCATCCTAGCCGAC
CAAGGGCTGCGCCTCGCAGTGTCCAAAGGCATCGACCGGCGGACCATCGCCAAGGTAGTTCAGTACGGCTTAGCCAACAA
TCCCGAGCCGTTGAACAACCACGTCTACGTCGACGGGCAGGAAGGCTACCAGGACAACAGTGGCGTTGTCGGCTACGACC
CGGAGCAGGCGCAACACGAGCTCGATGCCCTGGGCTGGAAGCTCAATGGTCAATTCCGGGAGAAGGACGGCCGTCAACTA
GTCATCCGCTATCTGTTCTACGATGCGCAAGGCAGCCGAGAGTTTGCTCAGCTCGCCCAGCACAGCCTCGCGCAAATCGG
CGTCAAACTTGAACTCCAAGCCAAAGCCGGCAGCGGCTTCTTCACCAACTACGTCAACGTGGGAGCTTTCGATATCGTGC
AGTTCGGCTGGGTCGGCGACGCATTCCCACTGTCAGCGCTCACCCAGATTTATCAATCCGACGGAGAGAGCAATTTCGGC
AAGATCAGTAGCCCGGCAGTAGACGCCGCGATCGAGCGAACGCTGGCCGAACTAGATCCCGCTAAGGCGCGCGCGTTGGC
CAACGAAGTCGACAAGCTGCTCTGGGCCGAAGGGTTCAGCTTGCCGCTCACCCAATCTCCGGGCGACGTCGCCGTACGCA
GCACGCTGGCCAACTTTGGCGCGGCCGGCTTCGGCGACCTGAACTACACCGCCATCGGATTCATGCAGAACTGA

Upstream 100 bases:

>100_bases
GTACCATTGTCGAGCAAGGCGACAGCCACGATGTCTTCCGCAATCCGCAGCACGATTACACGCGGCGGCTGCTGGGCGCG
ATACCACGACCAGAGGTCGG

Downstream 100 bases:

>100_bases
GGCGGCTGCGCAGCGACATTATCGCCGGCAGAGCACCCTCAACTGCGGCAGCCAGGTCGATCACCTTCCACAGCAACCGC
ACGACCGGACACGTCGGGAA

Product: putative extracellular solute-binding dependent transport lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MIMLSRIVAALLVVGLILTGCSASNRLVPSAASNAALGKTSDINPQDPATLKDGGNLRLALTDFPANFNILHIDGNNAEV
TSMMKATMPRAFIIGTDGSTTVDTNYFTSIKLTSTSPQVVTYTINPKAVWSDGTPITWRDIDRQIHANSGKNKAFEIAGT
NGCERVASIRPGANDRQAIVTFAQPYAEWRGMFAGNGMLLPATMTATPEAFNKGQLDRPGPSAGPFIVSSLDRTTQRIVL
THNPKWWGTPPRLDSITYLVLDDAARLPALQNNTIDATGVGTLDQLTTAQRTNGISIRRTPAPRWSHFTFNGAVGSILAD
QGLRLAVSKGIDRRTIAKVVQYGLANNPEPLNNHVYVDGQEGYQDNSGVVGYDPEQAQHELDALGWKLNGQFREKDGRQL
VIRYLFYDAQGSREFAQLAQHSLAQIGVKLELQAKAGSGFFTNYVNVGAFDIVQFGWVGDAFPLSALTQIYQSDGESNFG
KISSPAVDAAIERTLAELDPAKARALANEVDKLLWAEGFSLPLTQSPGDVAVRSTLANFGAAGFGDLNYTAIGFMQN

Sequences:

>Translated_557_residues
MIMLSRIVAALLVVGLILTGCSASNRLVPSAASNAALGKTSDINPQDPATLKDGGNLRLALTDFPANFNILHIDGNNAEV
TSMMKATMPRAFIIGTDGSTTVDTNYFTSIKLTSTSPQVVTYTINPKAVWSDGTPITWRDIDRQIHANSGKNKAFEIAGT
NGCERVASIRPGANDRQAIVTFAQPYAEWRGMFAGNGMLLPATMTATPEAFNKGQLDRPGPSAGPFIVSSLDRTTQRIVL
THNPKWWGTPPRLDSITYLVLDDAARLPALQNNTIDATGVGTLDQLTTAQRTNGISIRRTPAPRWSHFTFNGAVGSILAD
QGLRLAVSKGIDRRTIAKVVQYGLANNPEPLNNHVYVDGQEGYQDNSGVVGYDPEQAQHELDALGWKLNGQFREKDGRQL
VIRYLFYDAQGSREFAQLAQHSLAQIGVKLELQAKAGSGFFTNYVNVGAFDIVQFGWVGDAFPLSALTQIYQSDGESNFG
KISSPAVDAAIERTLAELDPAKARALANEVDKLLWAEGFSLPLTQSPGDVAVRSTLANFGAAGFGDLNYTAIGFMQN
>Mature_557_residues
MIMLSRIVAALLVVGLILTGCSASNRLVPSAASNAALGKTSDINPQDPATLKDGGNLRLALTDFPANFNILHIDGNNAEV
TSMMKATMPRAFIIGTDGSTTVDTNYFTSIKLTSTSPQVVTYTINPKAVWSDGTPITWRDIDRQIHANSGKNKAFEIAGT
NGCERVASIRPGANDRQAIVTFAQPYAEWRGMFAGNGMLLPATMTATPEAFNKGQLDRPGPSAGPFIVSSLDRTTQRIVL
THNPKWWGTPPRLDSITYLVLDDAARLPALQNNTIDATGVGTLDQLTTAQRTNGISIRRTPAPRWSHFTFNGAVGSILAD
QGLRLAVSKGIDRRTIAKVVQYGLANNPEPLNNHVYVDGQEGYQDNSGVVGYDPEQAQHELDALGWKLNGQFREKDGRQL
VIRYLFYDAQGSREFAQLAQHSLAQIGVKLELQAKAGSGFFTNYVNVGAFDIVQFGWVGDAFPLSALTQIYQSDGESNFG
KISSPAVDAAIERTLAELDPAKARALANEVDKLLWAEGFSLPLTQSPGDVAVRSTLANFGAAGFGDLNYTAIGFMQN

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yddopqrs. [C]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=480, Percent_Identity=22.2916666666667, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60011; Mature: 60011

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMLSRIVAALLVVGLILTGCSASNRLVPSAASNAALGKTSDINPQDPATLKDGGNLRLA
CEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEE
LTDFPANFNILHIDGNNAEVTSMMKATMPRAFIIGTDGSTTVDTNYFTSIKLTSTSPQVV
EEECCCCEEEEEEECCCCHHHHHHHHHCCEEEEEECCCCCEEECCEEEEEEEECCCCEEE
TYTINPKAVWSDGTPITWRDIDRQIHANSGKNKAFEIAGTNGCERVASIRPGANDRQAIV
EEEECCEEEECCCCCEEHHHCCCEEECCCCCCCEEEEECCCCHHHHHHCCCCCCCCEEEE
TFAQPYAEWRGMFAGNGMLLPATMTATPEAFNKGQLDRPGPSAGPFIVSSLDRTTQRIVL
EEHHHHHHHCCEECCCCEEEEEEECCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEE
THNPKWWGTPPRLDSITYLVLDDAARLPALQNNTIDATGVGTLDQLTTAQRTNGISIRRT
EECCCCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEC
PAPRWSHFTFNGAVGSILADQGLRLAVSKGIDRRTIAKVVQYGLANNPEPLNNHVYVDGQ
CCCCCCEEEECCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCC
EGYQDNSGVVGYDPEQAQHELDALGWKLNGQFREKDGRQLVIRYLFYDAQGSREFAQLAQ
CCCCCCCCEECCCHHHHHHHHHHCCEEECCEECCCCCCEEEEEEEEECCCCCHHHHHHHH
HSLAQIGVKLELQAKAGSGFFTNYVNVGAFDIVQFGWVGDAFPLSALTQIYQSDGESNFG
HHHHHCCEEEEEEECCCCCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCC
KISSPAVDAAIERTLAELDPAKARALANEVDKLLWAEGFSLPLTQSPGDVAVRSTLANFG
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
AAGFGDLNYTAIGFMQN
CCCCCCCCEEEEEEECC
>Mature Secondary Structure
MIMLSRIVAALLVVGLILTGCSASNRLVPSAASNAALGKTSDINPQDPATLKDGGNLRLA
CEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEE
LTDFPANFNILHIDGNNAEVTSMMKATMPRAFIIGTDGSTTVDTNYFTSIKLTSTSPQVV
EEECCCCEEEEEEECCCCHHHHHHHHHCCEEEEEECCCCCEEECCEEEEEEEECCCCEEE
TYTINPKAVWSDGTPITWRDIDRQIHANSGKNKAFEIAGTNGCERVASIRPGANDRQAIV
EEEECCEEEECCCCCEEHHHCCCEEECCCCCCCEEEEECCCCHHHHHHCCCCCCCCEEEE
TFAQPYAEWRGMFAGNGMLLPATMTATPEAFNKGQLDRPGPSAGPFIVSSLDRTTQRIVL
EEHHHHHHHCCEECCCCEEEEEEECCCCHHHCCCCCCCCCCCCCCHHHHHHCCCCEEEEE
THNPKWWGTPPRLDSITYLVLDDAARLPALQNNTIDATGVGTLDQLTTAQRTNGISIRRT
EECCCCCCCCCCCCCEEEEEEECHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEEC
PAPRWSHFTFNGAVGSILADQGLRLAVSKGIDRRTIAKVVQYGLANNPEPLNNHVYVDGQ
CCCCCCEEEECCCHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCC
EGYQDNSGVVGYDPEQAQHELDALGWKLNGQFREKDGRQLVIRYLFYDAQGSREFAQLAQ
CCCCCCCCEECCCHHHHHHHHHHCCEEECCEECCCCCCEEEEEEEEECCCCCHHHHHHHH
HSLAQIGVKLELQAKAGSGFFTNYVNVGAFDIVQFGWVGDAFPLSALTQIYQSDGESNFG
HHHHHCCEEEEEEECCCCCEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCC
KISSPAVDAAIERTLAELDPAKARALANEVDKLLWAEGFSLPLTQSPGDVAVRSTLANFG
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
AAGFGDLNYTAIGFMQN
CCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]