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The map label for this gene is ycdC [C]

Identifier: 221229781

GI number: 221229781

Start: 859926

End: 860597

Strand: Reverse

Name: ycdC [C]

Synonym: MLBr_00717

Alternate gene names: 221229781

Gene position: 860597-859926 (Counterclockwise)

Preceding gene: 221229782

Following gene: 221229778

Centisome position: 26.33

GC content: 60.57

Gene sequence:

>672_bases
ATGACCACAGCCAGGAGGCGTTTATCTCCCGAGGATCGGCGTGCTGAGCTGCTGGCACTGGGAGCAGAAGTGTTCGGGAA
GCGACCCTATGACGAAGTCCGCATCGATGAGATCGCCGAGCGTGCGGGGGTGTCGCGCGCGCTGATGTATCACTATTTCC
CTGACAAGCGCGCGTTCTTCGCCGCGGTTGTCAAGGACGAAGCTGATCGACTGTACGCGGCCACGAACATTCCGCCTCCT
GCTGGTTTGACCATGTTCGAAGAAGTGCGCGTCGGTGTACTGGCCTATATGGCCTACCACAAGCAGAATCCGGAGGCTGC
ATGGGCAGCCTACGTCGGTCTTGGCCGTTCTGACCCGGTTCTGCTCGGCATTGACGACGAAGCCAAGAACCGCCAGATGG
AACACATCATGTCCCGGATTGGGGATGTAGTGAGCGTAGTACCGGAGTCCAAACTGCATCCGGATATCGAGCGAGACCTG
CGGGTAATCGTGCACGGCTGGCTGGCGTTTACGTTCGAAGTGTGCCGGCAACGAATCATGGACCCATCGACCGACGCCGA
TCGCCTTGCCGACTCCTGCGCGCATGCGCTGCTGGACGCCATCGCCCGGGTGCCCGAGATTTCCAAAGAACTGGCCGATG
CGATGGCGATCGCGCGTCAGCCGCCGCAATAG

Upstream 100 bases:

>100_bases
GACGAGTTGCCACTAGCGCAGAGTATAAAATATAGGTAAGAGTTTGGCTGAGTCCACGCACCCGCAGGTCGTATACCCGC
CATGGGTAATATTCTGTCAC

Downstream 100 bases:

>100_bases
TCCGCAGATGAGGTGCTTTCGTCTGCAGAATTGTCGTTCGCCACTGACACCATGGCTAGGCGAGCACTACGTCACCTAAT
CAGTCCCTGCCCCCCGTACC

Product: putative TetR-family transcriptional regulator

Products: NA

Alternate protein names: TetR-Family Transcriptional Regulator; Transcriptional Regulator; Regulatory Protein TetR; Tetr Family Transcriptional Regulator; Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulatory Protein; Transcriptional Regulator TetR-Family

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MTTARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYAATNIPPP
AGLTMFEEVRVGVLAYMAYHKQNPEAAWAAYVGLGRSDPVLLGIDDEAKNRQMEHIMSRIGDVVSVVPESKLHPDIERDL
RVIVHGWLAFTFEVCRQRIMDPSTDADRLADSCAHALLDAIARVPEISKELADAMAIARQPPQ

Sequences:

>Translated_223_residues
MTTARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYAATNIPPP
AGLTMFEEVRVGVLAYMAYHKQNPEAAWAAYVGLGRSDPVLLGIDDEAKNRQMEHIMSRIGDVVSVVPESKLHPDIERDL
RVIVHGWLAFTFEVCRQRIMDPSTDADRLADSCAHALLDAIARVPEISKELADAMAIARQPPQ
>Mature_222_residues
TTARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFFAAVVKDEADRLYAATNIPPPA
GLTMFEEVRVGVLAYMAYHKQNPEAAWAAYVGLGRSDPVLLGIDDEAKNRQMEHIMSRIGDVVSVVPESKLHPDIERDLR
VIVHGWLAFTFEVCRQRIMDPSTDADRLADSCAHALLDAIARVPEISKELADAMAIARQPPQ

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24999; Mature: 24868

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFF
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
AAVVKDEADRLYAATNIPPPAGLTMFEEVRVGVLAYMAYHKQNPEAAWAAYVGLGRSDPV
HHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCE
LLGIDDEAKNRQMEHIMSRIGDVVSVVPESKLHPDIERDLRVIVHGWLAFTFEVCRQRIM
EEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
DPSTDADRLADSCAHALLDAIARVPEISKELADAMAIARQPPQ
CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TTARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAERAGVSRALMYHYFPDKRAFF
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
AAVVKDEADRLYAATNIPPPAGLTMFEEVRVGVLAYMAYHKQNPEAAWAAYVGLGRSDPV
HHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCE
LLGIDDEAKNRQMEHIMSRIGDVVSVVPESKLHPDIERDLRVIVHGWLAFTFEVCRQRIM
EEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
DPSTDADRLADSCAHALLDAIARVPEISKELADAMAIARQPPQ
CCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA