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The map label for this gene is yjfH [C]

Identifier: 221229566

GI number: 221229566

Start: 413636

End: 414472

Strand: Direct

Name: yjfH [C]

Synonym: MLBr_00324

Alternate gene names: 221229566

Gene position: 413636-414472 (Clockwise)

Preceding gene: 221229565

Following gene: 221229567

Centisome position: 12.66

GC content: 62.72

Gene sequence:

>837_bases
TTGGAGGGGCGTGGTCCGACACCGCCGGCGTATCTGCGTCCCAATCACCCCGCCGCCAAGCGGAATCAATCCTCGCCGCA
CCGGCCGGTCAAACGCACCGACGAGACAGAAACGGTGCTTGGCCGCAATCCGGTGCTGGAGTGTCTGCGCGCCGGCGTCC
CGGCAACTGCGCTTTACGTTGCGCTCGGTACCGAAGTCGACAAGCGGCTCACCGAATCCGTTATGAGAGCAGCCGATGTG
GGCGTGGCGATCCTCGAGGTACCGCGCACGTACCTAGATCGAATAACTAACAACCACTTACATCAGGGCATTGCGCTACA
GGTACCACCGTACCACTATGTTCACTCCGATGATCTGCTCGCCGCCGCTACCGATTCGCCGCCGGCGTTGTTGGTCGCGC
TGGATAACATCTCCGACCCCCGTAATCTCGGTGCAATCGTGCGATCGGTAGCGGCATTCAGCGGCCATGGCATCTTGATA
CCACAGCGGCGTTCCGCCTCGGTCACCGCGGTAGCGTGGCGCACCAGCGCCGGTGCTGCGGCGCGGATCCCAGTGGCGCG
GGCCACCAATCTAACTCGGGCGCTCAAGGTTTGGGCCGATCAAGGATTGCGGGTGATTGGACTGGACCACGATGGTGACA
CCGCACTCGACGACTTGGACGGCACGGACCCGTTGGCGGTAGTCGTTGGCTCGGAAGGCAAGGGTCTGTCGAGGTTGGTG
CGGCACAGCTGCGATGAGGTGGTGTCGATACCTATGGCCGGTCAGGTCGAATCGCTGAATGCCTCTGTGGCCGTCGGAGT
GGTGCTTGCCGAAATCGCCCGTCAGCGCAGGCTTTAA

Upstream 100 bases:

>100_bases
CAAGTTGATGCCCGGTAACTCGCGTCGCCGGGGGGCTGTCCGCAAATCCGGCACCAATAAGGGGACCACCGTTGGCTCGG
GCGGCCAGCGTCGCCGTGCG

Downstream 100 bases:

>100_bases
AGCCGTTGCTCGGCTGGCCCGCCTACGTCGGCGCCGTGTTAGTGGTGATGGCTGTCCGTGGTTCTTGCGCTGCCGCCATC
GGCGACCTCGTAACCACCCG

Product: putative methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MEGRGPTPPAYLRPNHPAAKRNQSSPHRPVKRTDETETVLGRNPVLECLRAGVPATALYVALGTEVDKRLTESVMRAADV
GVAILEVPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILI
PQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLV
RHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQRRL

Sequences:

>Translated_278_residues
MEGRGPTPPAYLRPNHPAAKRNQSSPHRPVKRTDETETVLGRNPVLECLRAGVPATALYVALGTEVDKRLTESVMRAADV
GVAILEVPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILI
PQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLV
RHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQRRL
>Mature_278_residues
MEGRGPTPPAYLRPNHPAAKRNQSSPHRPVKRTDETETVLGRNPVLECLRAGVPATALYVALGTEVDKRLTESVMRAADV
GVAILEVPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILI
PQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLV
RHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQRRL

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=267, Percent_Identity=29.9625468164794, Blast_Score=96, Evalue=5e-20,
Organism=Escherichia coli, GI1790623, Length=244, Percent_Identity=38.9344262295082, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1790083, Length=172, Percent_Identity=29.0697674418605, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788935, Length=247, Percent_Identity=25.9109311740891, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17555908, Length=293, Percent_Identity=29.0102389078498, Blast_Score=93, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 29576; Mature: 29576

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGRGPTPPAYLRPNHPAAKRNQSSPHRPVKRTDETETVLGRNPVLECLRAGVPATALYV
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHCCCCHHHEEE
ALGTEVDKRLTESVMRAADVGVAILEVPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLL
ECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCEEEECCCCEEECCCCEE
AAATDSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAA
EEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCE
ARIPVARATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLV
EECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
RHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQRRL
HHCHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEGRGPTPPAYLRPNHPAAKRNQSSPHRPVKRTDETETVLGRNPVLECLRAGVPATALYV
CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHCCCCHHHEEE
ALGTEVDKRLTESVMRAADVGVAILEVPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLL
ECCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCEEEECCCCEEECCCCEE
AAATDSPPALLVALDNISDPRNLGAIVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAA
EEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCE
ARIPVARATNLTRALKVWADQGLRVIGLDHDGDTALDDLDGTDPLAVVVGSEGKGLSRLV
EECCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
RHSCDEVVSIPMAGQVESLNASVAVGVVLAEIARQRRL
HHCHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA