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The map label for this gene is rfbD [H]

Identifier: 221229423

GI number: 221229423

Start: 152810

End: 153640

Strand: Reverse

Name: rfbD [H]

Synonym: MLBr_00112

Alternate gene names: 221229423

Gene position: 153640-152810 (Counterclockwise)

Preceding gene: 221229424

Following gene: 221229422

Centisome position: 4.7

GC content: 56.56

Gene sequence:

>831_bases
ATGACATTTGTCGATGCGGCAGCACAGTCACGCACTCTTGCTCGCGCCCGAAGTGATCTGATCGAGGGCTTACACCGCCA
CGAACTGTGGTTACACCTGGGCTGGCAGGATATCAAGCAGCGCTACCGCCGCTCGGTGCTAGGACCGTTCTGGATCACCA
TCGCGACCGGGACCACCTCCATTGCGATGGGCGGGCTGTATTCGAAGTTGTTTCACCTGGACCTATCTGTGCACCTGCCA
TACGTCACTCTTGGGTTGATCATCTGGAATTTGATCAACGCCGCAATCCTGGAAGGCGCTGAAGTGTTCGTCGCGAATGA
GGGCCTGATCAAACAGTTACCCACACCGTTGAGCGTGCATGTCTACCGACTGGTGTGGAGACAGACGATCTTGTTCACGC
ACAATATCATCATCTATCTCGTCGTTGGGATCCTCTTCCCTAAACCGTGGTCTTGGGCCGATCTGTCGGTCTTTCCGGCG
CTGGCGTTGGTAATCCTCAATAGTGTGTGGGTGTCACTGTGTTTCGGCATCCTGGCAACTCGCTACCGTGACATCGGCCC
CTTGCTGTTCTCAGTCGTGCAGTTGTTGTTTTTTATAACGCCAATCATCTGGAACGACGACGCGCTGCGGCAACAGGGCG
AGGGACGCTGGTCAAGCATAGTCGAACTTAACCCACTGCTGCACTACCTCGATATCGTGCGTGCACCACTGTTGGGTGCT
CACCAAGAGCTGCGGCATTGGGCAGTGGTGGTGACGCTAACAGCCGCTGGGTGGCTCTTAGCGGCGTTCGCGATGCGGCA
ATACCGCGCCCGGGTGCCCTACTGGGTGTAA

Upstream 100 bases:

>100_bases
TTGGGACGTCGCGAGAATTTCGGTAAGCCCGACATGAGAGGATCATCATGACGCGCACCGTCGACGATGAAGAGCAAAAC
AATGAGGAGGAGCAGCGCAA

Downstream 100 bases:

>100_bases
TCCCAGTAGGGCACCCGCCGAAAAGGCTCACCCGACTGGAAATCGGACTGGTTTCACAGAGCGAGCAGCATCTCGCCGGA
AAATCCGAACAATGTTGCAT

Product: putative ABC transporter component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MTFVDAAAQSRTLARARSDLIEGLHRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTSIAMGGLYSKLFHLDLSVHLP
YVTLGLIIWNLINAAILEGAEVFVANEGLIKQLPTPLSVHVYRLVWRQTILFTHNIIIYLVVGILFPKPWSWADLSVFPA
LALVILNSVWVSLCFGILATRYRDIGPLLFSVVQLLFFITPIIWNDDALRQQGEGRWSSIVELNPLLHYLDIVRAPLLGA
HQELRHWAVVVTLTAAGWLLAAFAMRQYRARVPYWV

Sequences:

>Translated_276_residues
MTFVDAAAQSRTLARARSDLIEGLHRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTSIAMGGLYSKLFHLDLSVHLP
YVTLGLIIWNLINAAILEGAEVFVANEGLIKQLPTPLSVHVYRLVWRQTILFTHNIIIYLVVGILFPKPWSWADLSVFPA
LALVILNSVWVSLCFGILATRYRDIGPLLFSVVQLLFFITPIIWNDDALRQQGEGRWSSIVELNPLLHYLDIVRAPLLGA
HQELRHWAVVVTLTAAGWLLAAFAMRQYRARVPYWV
>Mature_275_residues
TFVDAAAQSRTLARARSDLIEGLHRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTSIAMGGLYSKLFHLDLSVHLPY
VTLGLIIWNLINAAILEGAEVFVANEGLIKQLPTPLSVHVYRLVWRQTILFTHNIIIYLVVGILFPKPWSWADLSVFPAL
ALVILNSVWVSLCFGILATRYRDIGPLLFSVVQLLFFITPIIWNDDALRQQGEGRWSSIVELNPLLHYLDIVRAPLLGAH
QELRHWAVVVTLTAAGWLLAAFAMRQYRARVPYWV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31465; Mature: 31334

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFVDAAAQSRTLARARSDLIEGLHRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCEEEEEECCCHH
IAMGGLYSKLFHLDLSVHLPYVTLGLIIWNLINAAILEGAEVFVANEGLIKQLPTPLSVH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHH
VYRLVWRQTILFTHNIIIYLVVGILFPKPWSWADLSVFPALALVILNSVWVSLCFGILAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYRDIGPLLFSVVQLLFFITPIIWNDDALRQQGEGRWSSIVELNPLLHYLDIVRAPLLGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
HQELRHWAVVVTLTAAGWLLAAFAMRQYRARVPYWV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TFVDAAAQSRTLARARSDLIEGLHRHELWLHLGWQDIKQRYRRSVLGPFWITIATGTTS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHCCCCEEEEEECCCHH
IAMGGLYSKLFHLDLSVHLPYVTLGLIIWNLINAAILEGAEVFVANEGLIKQLPTPLSVH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHCCCCHHHH
VYRLVWRQTILFTHNIIIYLVVGILFPKPWSWADLSVFPALALVILNSVWVSLCFGILAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RYRDIGPLLFSVVQLLFFITPIIWNDDALRQQGEGRWSSIVELNPLLHYLDIVRAPLLGA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCH
HQELRHWAVVVTLTAAGWLLAAFAMRQYRARVPYWV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]