Click here to switch to the map view.

The map label for this gene is 220919141

Identifier: 220919141

GI number: 220919141

Start: 4536700

End: 4537770

Strand: Direct

Name: 220919141

Synonym: A2cp1_4061

Alternate gene names: NA

Gene position: 4536700-4537770 (Clockwise)

Preceding gene: 220919140

Following gene: 220919142

Centisome position: 90.2

GC content: 82.26

Gene sequence:

>1071_bases
ATGCGCCGCCGGGCCCACGTCGCGGCGCTGGGCCTGCTCCTCGCGGCGTCCCCCGCCGCCGCGGCGGGGTTCGTGGATCC
GCTCGACCAGCCCGCCGGCCCGAGCGCGCTCGCGGCGCGGCGGCCGCTGCTGTCGGTGGCCCGCGCGGGCGAGCGCCTGG
TGGCGGTCGGCGAGCGCGGGCTGGCGGTCCTCTCCGACGACGGCGGCGCGCGCTGGACGCAGGCGGCGGTGCCGGTGAGC
GAGGACCTCACCGCGGTGCGCTTCGCGTCGCCGCGGCTCGGCTGGGCGGTGGGCCACGGCGGCGTGGTGCTCGCGAGCGA
GGACGGCGGCGCGCGCTGGGAGCGACGCCTCGACGGGCGCGGGCTGGCGCGGCTCCTCGACGCGTGGGCGCGGGACGGCG
CCGGCCGGATCGCGCCGGCCGCGCTGGCGCAGGCGCGCGACCTCGCGGCGCGCGGCCCGGACCAGCCGCTCCTCGACGTG
TGGCTGGACGCCGCCGGCCGCGAGGGCTTCGCGGTGGGCGCGTTCGGCCTCGCGCTCGCCACCCGCGACGGCGGGCGGAC
CTGGACGCCCTGGCTCGACCGGCTCGAGAACCCGCGCGCGCTGCACCTGCACGCGCTCCTCGAAGCCCGCGGGGCGCTGT
ACCTCGCCGGCGAGCAGGGCCTGCTCCTGCGGCTCGACCGCGCCGCCGGGCGCTTCCGGGCGGTGGCCATCCCGTACGCG
GGCACCCTGTTCGGCCTCGCCGCCGACGGGCGCGCGCTGCTCGCGTTCGGGCTGCGCGGGACGGTGCTGCGCAGCGTGGA
CGGCGGGCCCTGGCGCAAGGTCGCGTCCGGCGTGGAGGCGGCGCTCACCGGCGGCGCGGCGCTGCCCGACGGGCGGCTGG
CGCTCGCGGCCGCCTCCGGCGAGCTGCTCGTGTCGGCGGACGGCGGCGCCACCTTCGAGCGCGTCTCGGCGCCGGGCGCG
GTGCTCGCGCCCGCCTTCGCGATCGCGCCGGCGGGTCCGGGCGCGCTGGCGGTGGCCGGCGCCGAGGGCGTGCGGGTGGT
GGCGCTGCCGCGCCCGCGCGAGGCGCCGTGA

Upstream 100 bases:

>100_bases
TCAACAGCTGGCCCGGCAAGGACGGCTGGATCCGCACCGGCGCCTGCCCGGGCGACGCCGAGTGGTCGCCGGACGCGCTC
GCGGGATCGGGCCTGCGCTG

Downstream 100 bases:

>100_bases
GGCGGGCGAGCGCGCGCGCGCCGGGGCACGAGCGCCCCGACGCAGCCGGTCCTGCGACGGGGAACGCGTCCTCGCGCGGC
GCGCCCGGGCCGTTCGATCC

Product: glycosyl hydrolase, BNR repeat-containing protein

Products: NA

Alternate protein names: Glycosyl Hydrolase; BNR/Asp-Box Repeat-Containing Protein; BNR Domain-Containing Protein; BNR Repeat-Containing Protein; Glycosyl Hydrolase BNR Repeat; Glycosyl Hydrolase BNR Repeat Protein; BNR/Asp-Box Repeat Protein; BNR/Asp-Box Repeat Domain Protein; Plant Photosystem II Stability/Assembly Factor Protein; Glycosyl Hydrolase BNR Repeat-Containing Glycosyl Hydrolase; Protein Related Photosystem II Stability/Assembly Factor; Oxidoreductase

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MRRRAHVAALGLLLAASPAAAAGFVDPLDQPAGPSALAARRPLLSVARAGERLVAVGERGLAVLSDDGGARWTQAAVPVS
EDLTAVRFASPRLGWAVGHGGVVLASEDGGARWERRLDGRGLARLLDAWARDGAGRIAPAALAQARDLAARGPDQPLLDV
WLDAAGREGFAVGAFGLALATRDGGRTWTPWLDRLENPRALHLHALLEARGALYLAGEQGLLLRLDRAAGRFRAVAIPYA
GTLFGLAADGRALLAFGLRGTVLRSVDGGPWRKVASGVEAALTGGAALPDGRLALAAASGELLVSADGGATFERVSAPGA
VLAPAFAIAPAGPGALAVAGAEGVRVVALPRPREAP

Sequences:

>Translated_356_residues
MRRRAHVAALGLLLAASPAAAAGFVDPLDQPAGPSALAARRPLLSVARAGERLVAVGERGLAVLSDDGGARWTQAAVPVS
EDLTAVRFASPRLGWAVGHGGVVLASEDGGARWERRLDGRGLARLLDAWARDGAGRIAPAALAQARDLAARGPDQPLLDV
WLDAAGREGFAVGAFGLALATRDGGRTWTPWLDRLENPRALHLHALLEARGALYLAGEQGLLLRLDRAAGRFRAVAIPYA
GTLFGLAADGRALLAFGLRGTVLRSVDGGPWRKVASGVEAALTGGAALPDGRLALAAASGELLVSADGGATFERVSAPGA
VLAPAFAIAPAGPGALAVAGAEGVRVVALPRPREAP
>Mature_356_residues
MRRRAHVAALGLLLAASPAAAAGFVDPLDQPAGPSALAARRPLLSVARAGERLVAVGERGLAVLSDDGGARWTQAAVPVS
EDLTAVRFASPRLGWAVGHGGVVLASEDGGARWERRLDGRGLARLLDAWARDGAGRIAPAALAQARDLAARGPDQPLLDV
WLDAAGREGFAVGAFGLALATRDGGRTWTPWLDRLENPRALHLHALLEARGALYLAGEQGLLLRLDRAAGRFRAVAIPYA
GTLFGLAADGRALLAFGLRGTVLRSVDGGPWRKVASGVEAALTGGAALPDGRLALAAASGELLVSADGGATFERVSAPGA
VLAPAFAIAPAGPGALAVAGAEGVRVVALPRPREAP

Specific function: Unknown

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36240; Mature: 36240

Theoretical pI: Translated: 11.31; Mature: 11.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRAHVAALGLLLAASPAAAAGFVDPLDQPAGPSALAARRPLLSVARAGERLVAVGERG
CCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
LAVLSDDGGARWTQAAVPVSEDLTAVRFASPRLGWAVGHGGVVLASEDGGARWERRLDGR
EEEEECCCCCCEEEECCCCCCCCEEEEECCCCCCEEECCCCEEEEECCCCCHHHHHCCCC
GLARLLDAWARDGAGRIAPAALAQARDLAARGPDQPLLDVWLDAAGREGFAVGAFGLALA
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEEEEEE
TRDGGRTWTPWLDRLENPRALHLHALLEARGALYLAGEQGLLLRLDRAAGRFRAVAIPYA
ECCCCCEECHHHHHCCCCCEEEHHHHHHHCCEEEEECCCCEEEEEECCCCCEEEEEECCC
GTLFGLAADGRALLAFGLRGTVLRSVDGGPWRKVASGVEAALTGGAALPDGRLALAAASG
CEEEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
ELLVSADGGATFERVSAPGAVLAPAFAIAPAGPGALAVAGAEGVRVVALPRPREAP
CEEEECCCCCCCHHHCCCCCHHCCCEEECCCCCCEEEEECCCCEEEEEECCCCCCC
>Mature Secondary Structure
MRRRAHVAALGLLLAASPAAAAGFVDPLDQPAGPSALAARRPLLSVARAGERLVAVGERG
CCCHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCC
LAVLSDDGGARWTQAAVPVSEDLTAVRFASPRLGWAVGHGGVVLASEDGGARWERRLDGR
EEEEECCCCCCEEEECCCCCCCCEEEEECCCCCCEEECCCCEEEEECCCCCHHHHHCCCC
GLARLLDAWARDGAGRIAPAALAQARDLAARGPDQPLLDVWLDAAGREGFAVGAFGLALA
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEEEEEEE
TRDGGRTWTPWLDRLENPRALHLHALLEARGALYLAGEQGLLLRLDRAAGRFRAVAIPYA
ECCCCCEECHHHHHCCCCCEEEHHHHHHHCCEEEEECCCCEEEEEECCCCCEEEEEECCC
GTLFGLAADGRALLAFGLRGTVLRSVDGGPWRKVASGVEAALTGGAALPDGRLALAAASG
CEEEEEECCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECC
ELLVSADGGATFERVSAPGAVLAPAFAIAPAGPGALAVAGAEGVRVVALPRPREAP
CEEEECCCCCCCHHHCCCCCHHCCCEEECCCCCCEEEEECCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA