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The map label for this gene is rpoZ

Identifier: 220918819

GI number: 220918819

Start: 4149414

End: 4149680

Strand: Direct

Name: rpoZ

Synonym: A2cp1_3731

Alternate gene names: 220918819

Gene position: 4149414-4149680 (Clockwise)

Preceding gene: 220918818

Following gene: 220918822

Centisome position: 82.5

GC content: 70.79

Gene sequence:

>267_bases
ATGGCCCGCGTCACCGTCGAAGACTGCCTCCCCATGGTGGACAACCGCTTCGCGCTCGTGCTGCTCGCGACCAAGCGGAC
CCGCCAGCTCATGGCCGGCGCCCGCCCGCTGCAGGCGGCGAGCAAGAACAAGCCGCCGGTCCTGGCGCTGCGCGAGATCG
CCACGGGCAAGGTCCGCTTCGACCGCTCGGTCCGCGACGCGCTCTCCGGCAAGTTCGACAAGGAGAAGGTCAACATCCCC
GCCGGCCAGACGCGGACGCTGCGCTAG

Upstream 100 bases:

>100_bases
GGCGCCGGCGCCCGCGGCGGAGCCCCGTCCCTTCCGAGGTTGACCCGCCCTCCCCGTCCGCTTATGTTCCGCCCTTCGCG
TCGAACCGAAGGAGAAGCGC

Downstream 100 bases:

>100_bases
CGCGACCGCCGCCGCAGGGACTCCGAGGGGCGCGCCACGTGGCGCGCCCTTTCGCGTTCACTGGAGCGTGCGCGTGCCCA
GGTACCCGAGCTTCTCGCCG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRFDRSVRDALSGKFDKEKVNIP
AGQTRTLR

Sequences:

>Translated_88_residues
MARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRFDRSVRDALSGKFDKEKVNIP
AGQTRTLR
>Mature_87_residues
ARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRFDRSVRDALSGKFDKEKVNIPA
GQTRTLR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_ANAD2 (B8J6T5)

Other databases:

- EMBL:   CP001359
- RefSeq:   YP_002494123.1
- GeneID:   7296103
- GenomeReviews:   CP001359_GR
- KEGG:   acp:A2cp1_3731
- HOGENOM:   HBG742204
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 9776; Mature: 9644

Theoretical pI: Translated: 11.76; Mature: 11.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRF
CCEEEHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEE
DRSVRDALSGKFDKEKVNIPAGQTRTLR
CHHHHHHHCCCCCCCEECCCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCLPMVDNRFALVLLATKRTRQLMAGARPLQAASKNKPPVLALREIATGKVRF
CEEEHHHHHHHCCCCEEEEEEECHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEE
DRSVRDALSGKFDKEKVNIPAGQTRTLR
CHHHHHHHCCCCCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA