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The map label for this gene is ybbE [H]

Identifier: 220918633

GI number: 220918633

Start: 3958397

End: 3959581

Strand: Reverse

Name: ybbE [H]

Synonym: A2cp1_3541

Alternate gene names: 220918633

Gene position: 3959581-3958397 (Counterclockwise)

Preceding gene: 220918634

Following gene: 220918632

Centisome position: 78.73

GC content: 80.68

Gene sequence:

>1185_bases
GTGAGCGCCGCGCTCCCGCCGGTCGCGGCCGTGCTGGACGCGGGCGCGCGCGAGCGCGTCGCCCCGGCGCTCTCTGCGGC
GGTGCTCCGCGACGGGCGGCTGGTCCACGCGAGCTGGCACGGCGAGCTGTCCGGCCCGGCCCCGCGCGCGCTGCGGCGCG
ACGACCTGTTCGACGTGGCCTCCCTCACCAAGGTGATCGCGACCGCCACGCTCGCCGCGCAGCTCGTGGAGGAGGGCGCG
CTCGACCTCGACGCGCCCGTGGCCGCCCGGCTCCCGGGGTTCGAGGCCGGCGGGAAGGCCGGGGTCACCGCGCGCCACCT
GCTCGCGCACGCGAGCGGCCTGCCGCGCTGGCGGCCGTACTTCGAGCGCGTCGCCGCGGATCCCGTGGCCGGCGCCGCGT
TCCTGCCCCCGGGGCGCCGCCCCCCGCCGGCCGCGCTGACCGGCCCGTTCGCGCGCGGGCGCGCGCTCGTGCGCGAGGCG
GTGCTGGCGGAGCCGCTCGAGGCCGCGCCCGGCGCGCGCGCCGTCTACTGCGACCCCGGGTTCATCGCGCTCGGGCTGCT
CGTCGAGGCGCTCGGGGGCGCGCCGCTCGCCGCGCTCGCCGAACGCCGGGTGTTCCGGCCGCTCGGGCTCGGCGCCACGT
TCTTCCTCGACGGCGTCGATCCGGCCGCCGCGGCCGTCCGGTCGGCCGGCCGCGCCTTCGTCCCGACCGGTGCGTGCCCG
CGGCGCGGCGCGGCGGCGCTGCAGGGCGAGGTGAACGACGACAACGCCTGGGCCATGGGCGGCGCCGCCGGGCACGCGGG
CGTGTTCTCCACCGCGCCCGAGGTGGCGGCGCTCGGCCAGGCCTGGCTGGACGCGCTGGAGGGCCGCCCCTCGGTGGTGC
CGGCGCGCGCCGCCGCCGCGTTCGCCGAGCGCGATCCGACCCCCGGCAGCGAGCGCGCCCTGGGCTGGGACACGCCCAGC
CGCGGCGCCTCGTCGCTGGGCGGCCGGCTCGGGAGAGGGCCGCGCGGCGCGCTCGGCCACCTCGGGTTCACCGGGACGTC
GCTCTGGATCGACCGCGACGCCCGCCTGGTGTGCGCGCTGCTCACCAACCACGTCCACCCCTCCGGCCAGAGCGACCGGC
CGCGGATCCGCGCCTTCCGGCAGCGCTTCCACGACGCGGTGGCGGAGGCGCTGGGGATCGGGTAG

Upstream 100 bases:

>100_bases
GCGCCCGGGCGACGCTGGTCGCGCCCGGGCCCGGCGAGGAGGGCGCGCCGCGGCTGCTGTTCGACGGCTGGTGGGCCCGC
GAAGGCGAGGGCGCCGCCCG

Downstream 100 bases:

>100_bases
GCCGTGCATCTCGCCGCCGCCCCGCGCCCGCGCGCGCGGCCGGAGCGGCACCGGAGCGAACGTGATCGACTGGAAGAGCG
TGAAGCGCATCCACCTCATC

Product: beta-lactamase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MSAALPPVAAVLDAGARERVAPALSAAVLRDGRLVHASWHGELSGPAPRALRRDDLFDVASLTKVIATATLAAQLVEEGA
LDLDAPVAARLPGFEAGGKAGVTARHLLAHASGLPRWRPYFERVAADPVAGAAFLPPGRRPPPAALTGPFARGRALVREA
VLAEPLEAAPGARAVYCDPGFIALGLLVEALGGAPLAALAERRVFRPLGLGATFFLDGVDPAAAAVRSAGRAFVPTGACP
RRGAAALQGEVNDDNAWAMGGAAGHAGVFSTAPEVAALGQAWLDALEGRPSVVPARAAAAFAERDPTPGSERALGWDTPS
RGASSLGGRLGRGPRGALGHLGFTGTSLWIDRDARLVCALLTNHVHPSGQSDRPRIRAFRQRFHDAVAEALGIG

Sequences:

>Translated_394_residues
MSAALPPVAAVLDAGARERVAPALSAAVLRDGRLVHASWHGELSGPAPRALRRDDLFDVASLTKVIATATLAAQLVEEGA
LDLDAPVAARLPGFEAGGKAGVTARHLLAHASGLPRWRPYFERVAADPVAGAAFLPPGRRPPPAALTGPFARGRALVREA
VLAEPLEAAPGARAVYCDPGFIALGLLVEALGGAPLAALAERRVFRPLGLGATFFLDGVDPAAAAVRSAGRAFVPTGACP
RRGAAALQGEVNDDNAWAMGGAAGHAGVFSTAPEVAALGQAWLDALEGRPSVVPARAAAAFAERDPTPGSERALGWDTPS
RGASSLGGRLGRGPRGALGHLGFTGTSLWIDRDARLVCALLTNHVHPSGQSDRPRIRAFRQRFHDAVAEALGIG
>Mature_393_residues
SAALPPVAAVLDAGARERVAPALSAAVLRDGRLVHASWHGELSGPAPRALRRDDLFDVASLTKVIATATLAAQLVEEGAL
DLDAPVAARLPGFEAGGKAGVTARHLLAHASGLPRWRPYFERVAADPVAGAAFLPPGRRPPPAALTGPFARGRALVREAV
LAEPLEAAPGARAVYCDPGFIALGLLVEALGGAPLAALAERRVFRPLGLGATFFLDGVDPAAAAVRSAGRAFVPTGACPR
RGAAALQGEVNDDNAWAMGGAAGHAGVFSTAPEVAALGQAWLDALEGRPSVVPARAAAAFAERDPTPGSERALGWDTPSR
GASSLGGRLGRGPRGALGHLGFTGTSLWIDRDARLVCALLTNHVHPSGQSDRPRIRAFRQRFHDAVAEALGIG

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0214 family [H]

Homologues:

Organism=Escherichia coli, GI87082101, Length=369, Percent_Identity=28.4552845528455, Blast_Score=131, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466
- InterPro:   IPR022849 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: NA

Molecular weight: Translated: 40400; Mature: 40269

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAALPPVAAVLDAGARERVAPALSAAVLRDGRLVHASWHGELSGPAPRALRRDDLFDVA
CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
SLTKVIATATLAAQLVEEGALDLDAPVAARLPGFEAGGKAGVTARHLLAHASGLPRWRPY
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
FERVAADPVAGAAFLPPGRRPPPAALTGPFARGRALVREAVLAEPLEAAPGARAVYCDPG
HHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEECCH
FIALGLLVEALGGAPLAALAERRVFRPLGLGATFFLDGVDPAAAAVRSAGRAFVPTGACP
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCEECCCCCCC
RRGAAALQGEVNDDNAWAMGGAAGHAGVFSTAPEVAALGQAWLDALEGRPSVVPARAAAA
CCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FAERDPTPGSERALGWDTPSRGASSLGGRLGRGPRGALGHLGFTGTSLWIDRDARLVCAL
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHH
LTNHVHPSGQSDRPRIRAFRQRFHDAVAEALGIG
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAALPPVAAVLDAGARERVAPALSAAVLRDGRLVHASWHGELSGPAPRALRRDDLFDVA
CCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
SLTKVIATATLAAQLVEEGALDLDAPVAARLPGFEAGGKAGVTARHLLAHASGLPRWRPY
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHH
FERVAADPVAGAAFLPPGRRPPPAALTGPFARGRALVREAVLAEPLEAAPGARAVYCDPG
HHHHHCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCEEEECCH
FIALGLLVEALGGAPLAALAERRVFRPLGLGATFFLDGVDPAAAAVRSAGRAFVPTGACP
HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCEECCCCCCC
RRGAAALQGEVNDDNAWAMGGAAGHAGVFSTAPEVAALGQAWLDALEGRPSVVPARAAAA
CCCCHHHCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FAERDPTPGSERALGWDTPSRGASSLGGRLGRGPRGALGHLGFTGTSLWIDRDARLVCAL
HHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHH
LTNHVHPSGQSDRPRIRAFRQRFHDAVAEALGIG
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]