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The map label for this gene is comL [H]

Identifier: 220918604

GI number: 220918604

Start: 3926337

End: 3927125

Strand: Reverse

Name: comL [H]

Synonym: A2cp1_3512

Alternate gene names: 220918604

Gene position: 3927125-3926337 (Counterclockwise)

Preceding gene: 220918605

Following gene: 220918603

Centisome position: 78.08

GC content: 68.95

Gene sequence:

>789_bases
ATGCGCCGGAACCTCGCCCTCGCCGCCGCCCTGTCCGCCGCCGTGGCCCTCGCGGCGTGCGGCACCAAGCACACCACCTT
CACCGGCGGCCTGAAGCTCGGGAAGACGCCCGAGGAGAACTACCAGGCCGGCATGGACGAGCTGAAGGCGGACAACTTCA
CCGAGGCGGTGAAGTTCTTCGAGTTCGTGAAGACGAAGTACCCGTTCTCGAAGTTCGCGGCGCTGTCCGAGCTGCGCCTC
GCCGACGTGAAGTTCAAGCAGGACCGGTACCTGGAGGCCGCCGAGGCCTACAAGCAGTTCGTCCAGCTCCACCCCACCCA
CGAGGACGTGGACTACGCGGAGTACCGCTCCGGCCTCGCCTACTTCAAGGACGCGCCCGGCGACTTCGCGCTGTTCCCGC
CGGCGTCGGAGAAGGACCAGCGGCAGGCGGAGAAGGCGGTGCAGGTGCTGACCGACTTCGTCCAGACCCGGACCCAGTCG
AAGTACCTGGCGGACGCGAAGAAGGTGCTGGCCGAGGCCCAGACCCGGCTGGCGGCGCGCGAGTGGTACGTGGCCGAGTA
CTACTACAAGCGCTCGCGCTGGGCGGGCGCCGCGGGCCGGTACGAGACGCTGGTGGACAAGTACCCGGGCTCGACCCACG
AGCCCGAGGCGCTCTGGAAGCTCGCCAGCGCCTGCCTGAAGATGGACGAGAAGCACCGCGCCCGGAAGGCGCTCCAGACG
CTCATCGTGAAGCACCCGGGCGACGCGCGACGGGCCGAGGCCGAGAAGCTCCTTGCCTCGATCCGCTGA

Upstream 100 bases:

>100_bases
GGCCCGGGCCCTCGGGGTCTACGAGGACCAGGACGGCTGAACCCGGGCGGTCCCCGGAACGACTGCGCGCCGGCCGGGCC
TCTGCTATCTTCCGGGCCCC

Downstream 100 bases:

>100_bases
GCCGCCCGCGCCGCCGCCGGCGCGTCCCCCGCCGTTCTCCCCCGGCTCCCGCGCCGCCCGCCGGCGCGCCCGCGCCGCGA
AGGTCGGCGCCCCCTACCTC

Product: outer membrane assembly lipoprotein YfiO

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRRNLALAAALSAAVALAACGTKHTTFTGGLKLGKTPEENYQAGMDELKADNFTEAVKFFEFVKTKYPFSKFAALSELRL
ADVKFKQDRYLEAAEAYKQFVQLHPTHEDVDYAEYRSGLAYFKDAPGDFALFPPASEKDQRQAEKAVQVLTDFVQTRTQS
KYLADAKKVLAEAQTRLAAREWYVAEYYYKRSRWAGAAGRYETLVDKYPGSTHEPEALWKLASACLKMDEKHRARKALQT
LIVKHPGDARRAEAEKLLASIR

Sequences:

>Translated_262_residues
MRRNLALAAALSAAVALAACGTKHTTFTGGLKLGKTPEENYQAGMDELKADNFTEAVKFFEFVKTKYPFSKFAALSELRL
ADVKFKQDRYLEAAEAYKQFVQLHPTHEDVDYAEYRSGLAYFKDAPGDFALFPPASEKDQRQAEKAVQVLTDFVQTRTQS
KYLADAKKVLAEAQTRLAAREWYVAEYYYKRSRWAGAAGRYETLVDKYPGSTHEPEALWKLASACLKMDEKHRARKALQT
LIVKHPGDARRAEAEKLLASIR
>Mature_262_residues
MRRNLALAAALSAAVALAACGTKHTTFTGGLKLGKTPEENYQAGMDELKADNFTEAVKFFEFVKTKYPFSKFAALSELRL
ADVKFKQDRYLEAAEAYKQFVQLHPTHEDVDYAEYRSGLAYFKDAPGDFALFPPASEKDQRQAEKAVQVLTDFVQTRTQS
KYLADAKKVLAEAQTRLAAREWYVAEYYYKRSRWAGAAGRYETLVDKYPGSTHEPEALWKLASACLKMDEKHRARKALQT
LIVKHPGDARRAEAEKLLASIR

Specific function: Required for efficient transformation of Neisseria gonorrhoeae by species-related DNA [H]

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=246, Percent_Identity=28.8617886178862, Blast_Score=91, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29605; Mature: 29605

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRNLALAAALSAAVALAACGTKHTTFTGGLKLGKTPEENYQAGMDELKADNFTEAVKFF
CCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
EFVKTKYPFSKFAALSELRLADVKFKQDRYLEAAEAYKQFVQLHPTHEDVDYAEYRSGLA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHH
YFKDAPGDFALFPPASEKDQRQAEKAVQVLTDFVQTRTQSKYLADAKKVLAEAQTRLAAR
HHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWYVAEYYYKRSRWAGAAGRYETLVDKYPGSTHEPEALWKLASACLKMDEKHRARKALQT
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIVKHPGDARRAEAEKLLASIR
HHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRNLALAAALSAAVALAACGTKHTTFTGGLKLGKTPEENYQAGMDELKADNFTEAVKFF
CCCCHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
EFVKTKYPFSKFAALSELRLADVKFKQDRYLEAAEAYKQFVQLHPTHEDVDYAEYRSGLA
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHH
YFKDAPGDFALFPPASEKDQRQAEKAVQVLTDFVQTRTQSKYLADAKKVLAEAQTRLAAR
HHHCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWYVAEYYYKRSRWAGAAGRYETLVDKYPGSTHEPEALWKLASACLKMDEKHRARKALQT
HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LIVKHPGDARRAEAEKLLASIR
HHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8830266 [H]