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The map label for this gene is ybaQ [C]

Identifier: 220918513

GI number: 220918513

Start: 3811448

End: 3812599

Strand: Direct

Name: ybaQ [C]

Synonym: A2cp1_3421

Alternate gene names: 220918513

Gene position: 3811448-3812599 (Clockwise)

Preceding gene: 220918507

Following gene: 220918514

Centisome position: 75.78

GC content: 64.32

Gene sequence:

>1152_bases
ATGGCATCCCACCGCACGCCAGGCCAGCTGCTCGCCGAGCTTCTTGAGGAGCGCTCCTGGACGCAGAACGTCCTGTCAGT
AGTCCTCGGCATCAACAAGGCCACCATCAGCCAGATCGTGGCCGGGAAGCGGGACCTCGATGTCGAACTCGCGCTCCGGC
TCGCCGAGATCTTCGATGTGCCGGTCCAGCAGTTCATGGATCTGCAGAAGTCGTATGAACTGTCGCGCGCACTCCTGACC
TGGTCCCCCGATCCCGCATTGGCGCGCCGCGCGGAGTTGTTCGGCTCACTGCCGATCGCCGAGATGATCAAGCGGTCCTG
GCTATCGGTCGGCGATCTAAAGGACATGCCCAAAGTCGAACGGGCAGTCGCTGCGTTCTTCGATGTCGCGGCGATCGAGG
ACGTGCTCACTCGTCCCCAGCCACACGCCGCGAAAAAGACCGCCGCGGGGACTCCGGTGACGCCGACGCAGCGTGCGTGG
CTCCAGCGTGTGAAGCAGATCGCGCGCGAGATGATCGCCCCGAGATACTCGGCGGCCGGGCTTCGCGCCGCGATCGAGAA
GCTCTCTGACCTTCGTCTCTCCCCGGACGAGGCTCGTCACGTGCCGCGCATTGTGGCTGAGGCCGGCGTGCGCTTCGTGC
TTGTTGAATCGCTGTCCGGCGCGAAGATCGACGGGGCATGTCTATGGCTGGACGAGAAGGCTCCCGTCGTCGGCATGTCT
ATGCGCTTCGATCGTTTCGACAACTTCTGGTTCGTGCTTCGCCACGAGCTCGAGCATGTCCTCCGTGACCACGGCCGAGA
CCATCCAATGCTCGACACCGAGTTGGAGGCCAGCAACTCCGTGGTCGGGACCGACCGGCCCGAAGAGGAACGCCAGGCGG
ATGCCGCCGCCGCAGCGTTCTGTGTGCCGCAGAAGGATCTCGAGTCCTTCATCGCGCGGAAGAGCCCGTTCTTCGCGGAC
CGCGACATCGTCGGCTTCGCCGCGAAGCGCCGGATCCACCCGAGTCTCGTCGCTGGTCAGATCCGCCACCGAATGAAGCG
GTGGGATTTGTTCACGAAGCACAACGCGAAGGTGCGGTTTGCAGTTGCACCGGGTGCGATGGTCGATGGCTGGGGGAACG
TCGCCCCAGTAGAGCAGGCAAGGAGCGTGTAG

Upstream 100 bases:

>100_bases
CGCGTGTAGGGGAAACCACCTGCCACCAAAGTGTCGAGTTTAGAATTTTATAAACACCCCACTTGCGGGCGGGCGCCGTG
CCCGCTAGCCTGTGGACTGC

Downstream 100 bases:

>100_bases
CGATGAAGAAGGCGATCCTCCACCAGCGGCTCCGCCGGCAATATCAGGAGGAGACGGGTAACGCCGGTCCAGTGACGACG
AACGAGGTCGCGCGCTGGGC

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: XRE Family Plasmid Maintenance System Antidote Protein; Plasmid Maintenance System Antidote Protein; Helix-Turn-Helix Domain-Containing Protein; Transcription Regulator With HTH Domain; HTH-Type Transcriptional Regulator; Virulence-Associated Protein I; Helix-Turn-Helix Domain Protein; Plasmid Maintenance System Antidote Protein Xre Family; Plasmid-Related Protein

Number of amino acids: Translated: 383; Mature: 382

Protein sequence:

>383_residues
MASHRTPGQLLAELLEERSWTQNVLSVVLGINKATISQIVAGKRDLDVELALRLAEIFDVPVQQFMDLQKSYELSRALLT
WSPDPALARRAELFGSLPIAEMIKRSWLSVGDLKDMPKVERAVAAFFDVAAIEDVLTRPQPHAAKKTAAGTPVTPTQRAW
LQRVKQIAREMIAPRYSAAGLRAAIEKLSDLRLSPDEARHVPRIVAEAGVRFVLVESLSGAKIDGACLWLDEKAPVVGMS
MRFDRFDNFWFVLRHELEHVLRDHGRDHPMLDTELEASNSVVGTDRPEEERQADAAAAAFCVPQKDLESFIARKSPFFAD
RDIVGFAAKRRIHPSLVAGQIRHRMKRWDLFTKHNAKVRFAVAPGAMVDGWGNVAPVEQARSV

Sequences:

>Translated_383_residues
MASHRTPGQLLAELLEERSWTQNVLSVVLGINKATISQIVAGKRDLDVELALRLAEIFDVPVQQFMDLQKSYELSRALLT
WSPDPALARRAELFGSLPIAEMIKRSWLSVGDLKDMPKVERAVAAFFDVAAIEDVLTRPQPHAAKKTAAGTPVTPTQRAW
LQRVKQIAREMIAPRYSAAGLRAAIEKLSDLRLSPDEARHVPRIVAEAGVRFVLVESLSGAKIDGACLWLDEKAPVVGMS
MRFDRFDNFWFVLRHELEHVLRDHGRDHPMLDTELEASNSVVGTDRPEEERQADAAAAAFCVPQKDLESFIARKSPFFAD
RDIVGFAAKRRIHPSLVAGQIRHRMKRWDLFTKHNAKVRFAVAPGAMVDGWGNVAPVEQARSV
>Mature_382_residues
ASHRTPGQLLAELLEERSWTQNVLSVVLGINKATISQIVAGKRDLDVELALRLAEIFDVPVQQFMDLQKSYELSRALLTW
SPDPALARRAELFGSLPIAEMIKRSWLSVGDLKDMPKVERAVAAFFDVAAIEDVLTRPQPHAAKKTAAGTPVTPTQRAWL
QRVKQIAREMIAPRYSAAGLRAAIEKLSDLRLSPDEARHVPRIVAEAGVRFVLVESLSGAKIDGACLWLDEKAPVVGMSM
RFDRFDNFWFVLRHELEHVLRDHGRDHPMLDTELEASNSVVGTDRPEEERQADAAAAAFCVPQKDLESFIARKSPFFADR
DIVGFAAKRRIHPSLVAGQIRHRMKRWDLFTKHNAKVRFAVAPGAMVDGWGNVAPVEQARSV

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42772; Mature: 42641

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASHRTPGQLLAELLEERSWTQNVLSVVLGINKATISQIVAGKRDLDVELALRLAEIFDV
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
PVQQFMDLQKSYELSRALLTWSPDPALARRAELFGSLPIAEMIKRSWLSVGDLKDMPKVE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH
RAVAAFFDVAAIEDVLTRPQPHAAKKTAAGTPVTPTQRAWLQRVKQIAREMIAPRYSAAG
HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
LRAAIEKLSDLRLSPDEARHVPRIVAEAGVRFVLVESLSGAKIDGACLWLDEKAPVVGMS
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEECC
MRFDRFDNFWFVLRHELEHVLRDHGRDHPMLDTELEASNSVVGTDRPEEERQADAAAAAF
HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
CVPQKDLESFIARKSPFFADRDIVGFAAKRRIHPSLVAGQIRHRMKRWDLFTKHNAKVRF
HCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
AVAPGAMVDGWGNVAPVEQARSV
EECCCCEECCCCCCCCHHHHCCC
>Mature Secondary Structure 
ASHRTPGQLLAELLEERSWTQNVLSVVLGINKATISQIVAGKRDLDVELALRLAEIFDV
CCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHH
PVQQFMDLQKSYELSRALLTWSPDPALARRAELFGSLPIAEMIKRSWLSVGDLKDMPKVE
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH
RAVAAFFDVAAIEDVLTRPQPHAAKKTAAGTPVTPTQRAWLQRVKQIAREMIAPRYSAAG
HHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
LRAAIEKLSDLRLSPDEARHVPRIVAEAGVRFVLVESLSGAKIDGACLWLDEKAPVVGMS
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEECCCCCEEECC
MRFDRFDNFWFVLRHELEHVLRDHGRDHPMLDTELEASNSVVGTDRPEEERQADAAAAAF
HHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
CVPQKDLESFIARKSPFFADRDIVGFAAKRRIHPSLVAGQIRHRMKRWDLFTKHNAKVRF
HCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEE
AVAPGAMVDGWGNVAPVEQARSV
EECCCCEECCCCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA