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The map label for this gene is yqhC [H]

Identifier: 220918491

GI number: 220918491

Start: 3786143

End: 3787078

Strand: Reverse

Name: yqhC [H]

Synonym: A2cp1_3397

Alternate gene names: 220918491

Gene position: 3787078-3786143 (Counterclockwise)

Preceding gene: 220918496

Following gene: 220918490

Centisome position: 75.3

GC content: 70.83

Gene sequence:

>936_bases
ATGCCATCCGACCAGACAGGGACGTCTCTCGACGCAATCCGCGCGGCGCTGGCGCGCACCATCGGGCGGTGGACCGAGGG
CGTCGAGGACCGCTCGACGCCCATCGCGGACCTCCTGTTCTTCCGCCGCGAGGGGCCGACGCCGCCGGGCATCTGCAGGG
TCGAGCCGAGCGTGGTCCTGGTGGTCCAGGGGAAGAAGCGGATGCTCGCGGGCGACGACGCGTACGCGTACGACCGGGAT
CACTTCCTGATCGCGTCGCTCGACGTCCCGGCGAGCTCCCAGGTCCTCGAGGCGAGCCCGAAACGACCTTGCCTGGGCCT
GACCCTGAAGCTCGACCTGCGCCTGCTGGCCGAGCTCGTGCCGCAGGTCCACCTGGCGGCGCGCGAGGAGCGCTCCGCCG
CGAAGGGCATGGCGCTCGGCGCGGTCACGCCGCCGCTGCTCGACGCCTTCATGCGGCTCACGGATCTGCTCGACGAGCCG
GACGCGATCGACGTGCTGGCGCCGCTCGTGCGTCGCGAGCTCCACTATCGGCTGCTGACGAGCGACCAGGCGGGACGCCT
GCGCCAGATTGCATCCGTGGGCAGCCAGAGCCACGCCATCGCGCGCGCCATCGAGTGGCTGAAGGTGAACTATGCGGCGC
CGCTGCGCATCGCGGAGCTGGCTGCGCGCGTGCACATGAGCCCGTCGAGCCTGCACCAGCACTTCCGCCAGCTCACGGCG
ATGAGCCCGCTGCAGTACCAGAAGTGGCTGCGGCTGAACGAGGCGAGGCGGGTGATGCTGAACGAGGGCTTCGATGCGGC
CGGCGCCGCATTCAAGGTCGGGTACGAGAGCCCCTCGCAGTTCAGCCGCGAGTACGCGCGGCTCTTCGGCGCGCCTCCTC
GGCGACACGTGGTCAGCTTGCGCAGCAAGGCCGCCGCCTCACAGCTCTCGCCGTGA

Upstream 100 bases:

>100_bases
GGCGCCTGTTCTTGCCTGATCCGACAAGGCCGCGGAGGATCGAGAACGCCTGGGCGGCATTCGCTACAATGATGCTCCGT
GAGGGAGGGAAAGGGCCCGC

Downstream 100 bases:

>100_bases
GGGGCAGGTCGAGGCGGGCCCGTCGACCCGGCGGCAGGCCCGGACCACCCTGGCGCGCTGCGCCCCTGGTGCGCGCGCGG
GGACCGATTCTGTATGGTCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MPSDQTGTSLDAIRAALARTIGRWTEGVEDRSTPIADLLFFRREGPTPPGICRVEPSVVLVVQGKKRMLAGDDAYAYDRD
HFLIASLDVPASSQVLEASPKRPCLGLTLKLDLRLLAELVPQVHLAAREERSAAKGMALGAVTPPLLDAFMRLTDLLDEP
DAIDVLAPLVRRELHYRLLTSDQAGRLRQIASVGSQSHAIARAIEWLKVNYAAPLRIAELAARVHMSPSSLHQHFRQLTA
MSPLQYQKWLRLNEARRVMLNEGFDAAGAAFKVGYESPSQFSREYARLFGAPPRRHVVSLRSKAAASQLSP

Sequences:

>Translated_311_residues
MPSDQTGTSLDAIRAALARTIGRWTEGVEDRSTPIADLLFFRREGPTPPGICRVEPSVVLVVQGKKRMLAGDDAYAYDRD
HFLIASLDVPASSQVLEASPKRPCLGLTLKLDLRLLAELVPQVHLAAREERSAAKGMALGAVTPPLLDAFMRLTDLLDEP
DAIDVLAPLVRRELHYRLLTSDQAGRLRQIASVGSQSHAIARAIEWLKVNYAAPLRIAELAARVHMSPSSLHQHFRQLTA
MSPLQYQKWLRLNEARRVMLNEGFDAAGAAFKVGYESPSQFSREYARLFGAPPRRHVVSLRSKAAASQLSP
>Mature_310_residues
PSDQTGTSLDAIRAALARTIGRWTEGVEDRSTPIADLLFFRREGPTPPGICRVEPSVVLVVQGKKRMLAGDDAYAYDRDH
FLIASLDVPASSQVLEASPKRPCLGLTLKLDLRLLAELVPQVHLAAREERSAAKGMALGAVTPPLLDAFMRLTDLLDEPD
AIDVLAPLVRRELHYRLLTSDQAGRLRQIASVGSQSHAIARAIEWLKVNYAAPLRIAELAARVHMSPSSLHQHFRQLTAM
SPLQYQKWLRLNEARRVMLNEGFDAAGAAFKVGYESPSQFSREYARLFGAPPRRHVVSLRSKAAASQLSP

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=297, Percent_Identity=28.956228956229, Blast_Score=137, Evalue=9e-34,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34298; Mature: 34167

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSDQTGTSLDAIRAALARTIGRWTEGVEDRSTPIADLLFFRREGPTPPGICRVEPSVVL
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCEEE
VVQGKKRMLAGDDAYAYDRDHFLIASLDVPASSQVLEASPKRPCLGLTLKLDLRLLAELV
EECCCCCEECCCCCCEECCCCEEEEEECCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHH
PQVHLAAREERSAAKGMALGAVTPPLLDAFMRLTDLLDEPDAIDVLAPLVRRELHYRLLT
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
SDQAGRLRQIASVGSQSHAIARAIEWLKVNYAAPLRIAELAARVHMSPSSLHQHFRQLTA
CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
MSPLQYQKWLRLNEARRVMLNEGFDAAGAAFKVGYESPSQFSREYARLFGAPPRRHVVSL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHH
RSKAAASQLSP
HHHHHHHCCCC
>Mature Secondary Structure 
PSDQTGTSLDAIRAALARTIGRWTEGVEDRSTPIADLLFFRREGPTPPGICRVEPSVVL
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCEEE
VVQGKKRMLAGDDAYAYDRDHFLIASLDVPASSQVLEASPKRPCLGLTLKLDLRLLAELV
EECCCCCEECCCCCCEECCCCEEEEEECCCCCCHHHHCCCCCCEEEEEEHHHHHHHHHHH
PQVHLAAREERSAAKGMALGAVTPPLLDAFMRLTDLLDEPDAIDVLAPLVRRELHYRLLT
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHC
SDQAGRLRQIASVGSQSHAIARAIEWLKVNYAAPLRIAELAARVHMSPSSLHQHFRQLTA
CCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
MSPLQYQKWLRLNEARRVMLNEGFDAAGAAFKVGYESPSQFSREYARLFGAPPRRHVVSL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCHHHHHHH
RSKAAASQLSP
HHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]