Click here to switch to the map view.

The map label for this gene is ycaN [H]

Identifier: 220918421

GI number: 220918421

Start: 3702502

End: 3703440

Strand: Reverse

Name: ycaN [H]

Synonym: A2cp1_3325

Alternate gene names: 220918421

Gene position: 3703440-3702502 (Counterclockwise)

Preceding gene: 220918423

Following gene: 220918419

Centisome position: 73.64

GC content: 79.02

Gene sequence:

>939_bases
ATGCTTCGTGCCATGGATGAGATGATCGATCCGGGGGACCTGCGGCTGTTCGTGGCGGTGGCGCAGCAGTCGAGCTTCGT
GGCGGCGTCCCGGCGCACCGGCGTCCCGACCAGCACCGTCAGCCGCGCGGTGGCGCGCCTGGAGGAGCGGCTCGGGGTCC
GCCTGCTGCACCGCACCTCCCGGCGCGTCTCCGCCACGGACGAGGGGGCGCGGCTGCTCGCGCGCGCGGCGCCGCTGCTC
GATCAGCTCCGGGACCTGCTCGAGGACGCGGCCGATCGCGAGGAGGAGCCCTCCGGCAGGCTGCGGGTGACGGCGCCGGT
GGTGACGGGCGCGGAGCGGGTCGGCCGGGCGCTCATCGCGTACGCGGCGGCCCACCCGCGCGTCAGCGTGGACCTGCGGC
TCACCAACTCGGTGCTGAGCCTGGTGGAGGAGGGGCTCGACCTGGCGTTCCGGGTCGGGCCGGTCGCCGAGGCCGACGTG
GTGGCGCGCCGGCTCTGGGCGATCCCGTCCGCGCTGGCGGCCTCGCCGGAGGTGGTCGCGCGCGCGCTCGGGGGCCGGCG
GCGGGTGGACGCGGCGACGCTGGCGCGGGCGCCGGCGGTGGTGACGCACCCGGGCCGGCCGTGGCGGTTCCTGGGTGCGG
ACGGGGTGGTGCGCGAGCTGCGGCCGAACGAGCGCTTCGCGGCGACCGACCCGCGCGTCGCGGTCGAGGCCGCGCTGGCG
GGGCTCGGCGTGGTGCGCGCGCCGGCCGAGATGATCGCCCGCGCGGGAGGGCTGGTGGCGCTGGAGTGCGCGCTGGGGGA
GCCGGAGGGGCGGGAGCTGTTCGCGGTCTACCCGTCGCGGCGGCTCGTGCCCCGGCGCGTGCGCGACGCCATCGAGTGGG
TCCGGCGCACGGGACCGGGCGGCTCCGACGTCGCGCGCCGCCGGCGCCCGCCCGGCTGA

Upstream 100 bases:

>100_bases
ACCACCACCACCGTCCGATCCTTCAGCCCGGCCCCAGTCGTCGTCGTCATGCACGCATCCATGCCCGCGGCGGCGCGGGT
GATCAACGGGACGATCCGGT

Downstream 100 bases:

>100_bases
TCGGCTCAGCGCGCCCGAGCGGGCTCGACCCGCCGCAACTTGTCCGGGTTGAGCACCGCGTAGAACGCGGTCACGCGCTC
GCCGTCGGTGGCGAACGAGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLRAMDEMIDPGDLRLFVAVAQQSSFVAASRRTGVPTSTVSRAVARLEERLGVRLLHRTSRRVSATDEGARLLARAAPLL
DQLRDLLEDAADREEEPSGRLRVTAPVVTGAERVGRALIAYAAAHPRVSVDLRLTNSVLSLVEEGLDLAFRVGPVAEADV
VARRLWAIPSALAASPEVVARALGGRRRVDAATLARAPAVVTHPGRPWRFLGADGVVRELRPNERFAATDPRVAVEAALA
GLGVVRAPAEMIARAGGLVALECALGEPEGRELFAVYPSRRLVPRRVRDAIEWVRRTGPGGSDVARRRRPPG

Sequences:

>Translated_312_residues
MLRAMDEMIDPGDLRLFVAVAQQSSFVAASRRTGVPTSTVSRAVARLEERLGVRLLHRTSRRVSATDEGARLLARAAPLL
DQLRDLLEDAADREEEPSGRLRVTAPVVTGAERVGRALIAYAAAHPRVSVDLRLTNSVLSLVEEGLDLAFRVGPVAEADV
VARRLWAIPSALAASPEVVARALGGRRRVDAATLARAPAVVTHPGRPWRFLGADGVVRELRPNERFAATDPRVAVEAALA
GLGVVRAPAEMIARAGGLVALECALGEPEGRELFAVYPSRRLVPRRVRDAIEWVRRTGPGGSDVARRRRPPG
>Mature_312_residues
MLRAMDEMIDPGDLRLFVAVAQQSSFVAASRRTGVPTSTVSRAVARLEERLGVRLLHRTSRRVSATDEGARLLARAAPLL
DQLRDLLEDAADREEEPSGRLRVTAPVVTGAERVGRALIAYAAAHPRVSVDLRLTNSVLSLVEEGLDLAFRVGPVAEADV
VARRLWAIPSALAASPEVVARALGGRRRVDAATLARAPAVVTHPGRPWRFLGADGVVRELRPNERFAATDPRVAVEAALA
GLGVVRAPAEMIARAGGLVALECALGEPEGRELFAVYPSRRLVPRRVRDAIEWVRRTGPGGSDVARRRRPPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=308, Percent_Identity=27.5974025974026, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87081978, Length=300, Percent_Identity=30, Blast_Score=110, Evalue=8e-26,
Organism=Escherichia coli, GI1786401, Length=299, Percent_Identity=28.0936454849498, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=29.0657439446367, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=25.886524822695, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787589, Length=281, Percent_Identity=28.4697508896797, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789440, Length=238, Percent_Identity=23.9495798319328, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788748, Length=187, Percent_Identity=32.620320855615, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082132, Length=175, Percent_Identity=30.2857142857143, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33592; Mature: 33592

Theoretical pI: Translated: 11.72; Mature: 11.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAMDEMIDPGDLRLFVAVAQQSSFVAASRRTGVPTSTVSRAVARLEERLGVRLLHRTS
CCCCHHHHCCCCCCEEEEEEHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRVSATDEGARLLARAAPLLDQLRDLLEDAADREEEPSGRLRVTAPVVTGAERVGRALIA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHCHHHHHHHHHH
YAAAHPRVSVDLRLTNSVLSLVEEGLDLAFRVGPVAEADVVARRLWAIPSALAASPEVVA
HHHCCCCEEEEEEHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHH
RALGGRRRVDAATLARAPAVVTHPGRPWRFLGADGVVRELRPNERFAATDPRVAVEAALA
HHHCCCCCCCHHHHHHCCEEEECCCCCEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHH
GLGVVRAPAEMIARAGGLVALECALGEPEGRELFAVYPSRRLVPRRVRDAIEWVRRTGPG
HHHHHHCCHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
GSDVARRRRPPG
CHHHHHCCCCCC
>Mature Secondary Structure
MLRAMDEMIDPGDLRLFVAVAQQSSFVAASRRTGVPTSTVSRAVARLEERLGVRLLHRTS
CCCCHHHHCCCCCCEEEEEEHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RRVSATDEGARLLARAAPLLDQLRDLLEDAADREEEPSGRLRVTAPVVTGAERVGRALIA
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHCHHHHHHHHHH
YAAAHPRVSVDLRLTNSVLSLVEEGLDLAFRVGPVAEADVVARRLWAIPSALAASPEVVA
HHHCCCCEEEEEEHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHH
RALGGRRRVDAATLARAPAVVTHPGRPWRFLGADGVVRELRPNERFAATDPRVAVEAALA
HHHCCCCCCCHHHHHHCCEEEECCCCCEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHH
GLGVVRAPAEMIARAGGLVALECALGEPEGRELFAVYPSRRLVPRRVRDAIEWVRRTGPG
HHHHHHCCHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
GSDVARRRRPPG
CHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]