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The map label for this gene is yfhQ [C]

Identifier: 220918283

GI number: 220918283

Start: 3528699

End: 3529412

Strand: Reverse

Name: yfhQ [C]

Synonym: A2cp1_3186

Alternate gene names: 220918283

Gene position: 3529412-3528699 (Counterclockwise)

Preceding gene: 220918286

Following gene: 220918281

Centisome position: 70.18

GC content: 78.29

Gene sequence:

>714_bases
ATGCGCCTCCCCGTCCGCCTGGTGCTGCTGCGCCCCCGCAACCCCGAGAACCTCGGCGCGGTGGCGCGCGCCATGAAGAA
CTTCGGCGCGGACGACTGGGCCATCGCCGAGCTGGGGACGCACGACTTCGCGGCCATGCGCCGCGTCGCGGTGCACGCGG
AGGAGCTGCTCGATCGTCCGCGGCTGGTGCGCACGCTCGACGAGGCCGTGGCCGACTGCGCCTGGGTGGTCGGGACCAGC
TCGCGGACGGTGAAGGGCAAGCGCCGCCTCCCGCCGGCCGAGGTGGCCCGGGAGGCGCTGGAGCGCGCCGCCGCCGGCCG
GACCGCGATCGTGTTCGGCGACGAGCGCAGCGGCCTCACGAACGACGAGGTGCACCGCTGCCACGACCTGTCCGCCATCC
CCGCCGGCGAGGCGCAGCCCTCGCTGAACCTGGCGCAGGCGGCGCTCGTCTACCTCTACGAGCTGCGCAAGGCGGCGCTC
GCGGCCGCCGCGCCACCGTCGCGTGCGGCCGAGGCCGGGGCGACCGACGCCGAGCTCACCGCGGTGGAGGACGCGCTCCG
CGCGGCGCTGCGGGGCGGGGGCTTCCTGGCCGGGCCGGAGCGCCACGCGGTCCGCGATCTCACCGCCGCGCTGCGCCGGG
CGCGGCTGGGCCGGCGCGAGGCGCGCCTGTGGCTCGCGGCGCTGCGGACGCTCGGGCGAGGCCGGGAGGGCTAG

Upstream 100 bases:

>100_bases
TGACGTGGAGCTGGAACGGGTTCTCGAGGAACCGCGCGGCGTGGGGCACGCGCCTCCTTTAGCACGGCCGGGCCGGGCCG
GCGCGGTACCATGCGCCGCG

Downstream 100 bases:

>100_bases
GGGCTCGCGGGGCGCGCGAGCGGCAGGTCCTCGAGCGTCACGCCCGGGAGCGCGGTCACGAGGTCGGGGCCGTAGGCGGA
CGCCGGGGTGTGCCAGCCCG

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MRLPVRLVLLRPRNPENLGAVARAMKNFGADDWAIAELGTHDFAAMRRVAVHAEELLDRPRLVRTLDEAVADCAWVVGTS
SRTVKGKRRLPPAEVAREALERAAAGRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAAL
AAAAPPSRAAEAGATDAELTAVEDALRAALRGGGFLAGPERHAVRDLTAALRRARLGRREARLWLAALRTLGRGREG

Sequences:

>Translated_237_residues
MRLPVRLVLLRPRNPENLGAVARAMKNFGADDWAIAELGTHDFAAMRRVAVHAEELLDRPRLVRTLDEAVADCAWVVGTS
SRTVKGKRRLPPAEVAREALERAAAGRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAAL
AAAAPPSRAAEAGATDAELTAVEDALRAALRGGGFLAGPERHAVRDLTAALRRARLGRREARLWLAALRTLGRGREG
>Mature_237_residues
MRLPVRLVLLRPRNPENLGAVARAMKNFGADDWAIAELGTHDFAAMRRVAVHAEELLDRPRLVRTLDEAVADCAWVVGTS
SRTVKGKRRLPPAEVAREALERAAAGRTAIVFGDERSGLTNDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAAL
AAAAPPSRAAEAGATDAELTAVEDALRAALRGGGFLAGPERHAVRDLTAALRRARLGRREARLWLAALRTLGRGREG

Specific function: Unknown

COG id: COG0565

COG function: function code J; rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1788881, Length=164, Percent_Identity=41.4634146341463, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1790865, Length=153, Percent_Identity=35.9477124183007, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004384
- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 25522; Mature: 25522

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPVRLVLLRPRNPENLGAVARAMKNFGADDWAIAELGTHDFAAMRRVAVHAEELLDRP
CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCH
RLVRTLDEAVADCAWVVGTSSRTVKGKRRLPPAEVAREALERAAAGRTAIVFGDERSGLT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPSRAAEAGATDAELT
CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHH
AVEDALRAALRGGGFLAGPERHAVRDLTAALRRARLGRREARLWLAALRTLGRGREG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRLPVRLVLLRPRNPENLGAVARAMKNFGADDWAIAELGTHDFAAMRRVAVHAEELLDRP
CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCH
RLVRTLDEAVADCAWVVGTSSRTVKGKRRLPPAEVAREALERAAAGRTAIVFGDERSGLT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCC
NDEVHRCHDLSAIPAGEAQPSLNLAQAALVYLYELRKAALAAAAPPSRAAEAGATDAELT
CHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHH
AVEDALRAALRGGGFLAGPERHAVRDLTAALRRARLGRREARLWLAALRTLGRGREG
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]