Click here to switch to the map view.

The map label for this gene is rutD [H]

Identifier: 220917294

GI number: 220917294

Start: 2435233

End: 2436285

Strand: Reverse

Name: rutD [H]

Synonym: A2cp1_2194

Alternate gene names: 220917294

Gene position: 2436285-2435233 (Counterclockwise)

Preceding gene: 220917297

Following gene: 220917293

Centisome position: 48.44

GC content: 76.83

Gene sequence:

>1053_bases
ATGGACGCGCACGCGCGGGCGGCACGGCAAGGCCCCGCCGCATCGCACGCGGGCGCGGCCGCCGCCGGGACCACGCACGG
GGAGCCGATGGAACGCACCGAGCCGCAGCAGGCCATCGCCCGGGACGGGACCCGGCTCCACTGGACCCACCGCGGGTCCG
GCGAGCCCGCGGTGGTGCTGACCGACGGCATCGGCTGCGCCGGCTACGTCTGGCGGGCGCTCGAGCCCGCGCTCGCCGGG
CGGCACCGGACCGTCCACTGGAACTACCGCGGCCACGGTCGGAGCGGTCCGCCGGCCGATCCGGCCCGGGTCGGCCTCGA
GGACTGCGTGGACGACCTCCTGGCGGTGCTCGACGCCGCCGGCGAGCGCGCCGCGGTCATCGCCGGCCACTCGATGGGCG
TGCAGGTGGCGCTCGAGCTGTACCGCCGCGCGCCCGAGCGCGTGCAGGCGCTCGTGCTGGTGTGCGGCGCGCCCGGCCGG
CCCATCGACACGTTCCACGACTCGCCCGTGCTCCGGCTGGCGTTCCCGTTCGCGCGGGCGCTGGTGGAACGGTTCCCCGA
GGCGGTGCGGACCGGGTTCCGGGTGCTGCTCCCGAGCGAGCTCGCCATGCAGTACGCGCTGCAGTTCGAGGTGGACCGCA
CCCGCGTCGAGCGCGCCGACCTCACCCGCTACTTCGACGACCTCTCGCGCGTCGAGCCCACGCTGTTCGTGCGCATGCTC
GCGTCCGCCGCCGAGCACGACTGCCTCCCCCACCTCCACGAGGTGGAGGTGCCGACGCTCGTGGTGGCCGGCGAGCGCGA
CTCCTTCACGCCGCTCCGGCTCTCCGAGCGCATGCACTCGGAGATCCCCGGGAGCGAGCTGCTGGTCGTGCCCGGCGGCA
CGCACGTCGCGCCGCTCGAGGCGCCCGACCTGGTGGCCGAGCGCGTGCTCGCGTTCCTCGAGGCTCGCGTCGCGGCGGCC
CGCTCCCGCAAGCGCGAGTCGCCAGCCTCGAAGCGCTCCCGTCCCGCCGCGACCCGGCGCCGGCGTCCCGCGACCACCCG
GCGCCCCGAGTGA

Upstream 100 bases:

>100_bases
GTCCCGGCCGTGGCCGGGGGCTCGTGCGCTCCGTGGACGTGCGGGTGGCCGTGCGACATTCCGCTTGAACCTCCGGGCCG
TGCAGTCTACGCCATGCTCC

Downstream 100 bases:

>100_bases
TCGCCCCCTCGCCCCGCGACGCCCGCCCCGCGGGCCACGCCCCTGCGCGCCGCGCGCCCCGCGCCGCGCTCGCCCTCGCC
CTCGCCTGCGCCTGCGCCGT

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: Aminohydrolase [H]

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MDAHARAARQGPAASHAGAAAAGTTHGEPMERTEPQQAIARDGTRLHWTHRGSGEPAVVLTDGIGCAGYVWRALEPALAG
RHRTVHWNYRGHGRSGPPADPARVGLEDCVDDLLAVLDAAGERAAVIAGHSMGVQVALELYRRAPERVQALVLVCGAPGR
PIDTFHDSPVLRLAFPFARALVERFPEAVRTGFRVLLPSELAMQYALQFEVDRTRVERADLTRYFDDLSRVEPTLFVRML
ASAAEHDCLPHLHEVEVPTLVVAGERDSFTPLRLSERMHSEIPGSELLVVPGGTHVAPLEAPDLVAERVLAFLEARVAAA
RSRKRESPASKRSRPAATRRRRPATTRRPE

Sequences:

>Translated_350_residues
MDAHARAARQGPAASHAGAAAAGTTHGEPMERTEPQQAIARDGTRLHWTHRGSGEPAVVLTDGIGCAGYVWRALEPALAG
RHRTVHWNYRGHGRSGPPADPARVGLEDCVDDLLAVLDAAGERAAVIAGHSMGVQVALELYRRAPERVQALVLVCGAPGR
PIDTFHDSPVLRLAFPFARALVERFPEAVRTGFRVLLPSELAMQYALQFEVDRTRVERADLTRYFDDLSRVEPTLFVRML
ASAAEHDCLPHLHEVEVPTLVVAGERDSFTPLRLSERMHSEIPGSELLVVPGGTHVAPLEAPDLVAERVLAFLEARVAAA
RSRKRESPASKRSRPAATRRRRPATTRRPE
>Mature_350_residues
MDAHARAARQGPAASHAGAAAAGTTHGEPMERTEPQQAIARDGTRLHWTHRGSGEPAVVLTDGIGCAGYVWRALEPALAG
RHRTVHWNYRGHGRSGPPADPARVGLEDCVDDLLAVLDAAGERAAVIAGHSMGVQVALELYRRAPERVQALVLVCGAPGR
PIDTFHDSPVLRLAFPFARALVERFPEAVRTGFRVLLPSELAMQYALQFEVDRTRVERADLTRYFDDLSRVEPTLFVRML
ASAAEHDCLPHLHEVEVPTLVVAGERDSFTPLRLSERMHSEIPGSELLVVPGGTHVAPLEAPDLVAERVLAFLEARVAAA
RSRKRESPASKRSRPAATRRRRPATTRRPE

Specific function: May increase the rate of spontaneous hydrolysis of aminoacrylate to malonic semialdehyde. Required to remove a toxic intermediate produce in the pyrimidine nitrogen degradation [H]

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Hydrolase RutD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR019913 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 38219; Mature: 38219

Theoretical pI: Translated: 8.38; Mature: 8.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAHARAARQGPAASHAGAAAAGTTHGEPMERTEPQQAIARDGTRLHWTHRGSGEPAVVL
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCEEEE
TDGIGCAGYVWRALEPALAGRHRTVHWNYRGHGRSGPPADPARVGLEDCVDDLLAVLDAA
ECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHCC
GERAAVIAGHSMGVQVALELYRRAPERVQALVLVCGAPGRPIDTFHDSPVLRLAFPFARA
CCCEEEEECCCHHHHHHHHHHHHCHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
LVERFPEAVRTGFRVLLPSELAMQYALQFEVDRTRVERADLTRYFDDLSRVEPTLFVRML
HHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
ASAAEHDCLPHLHEVEVPTLVVAGERDSFTPLRLSERMHSEIPGSELLVVPGGTHVAPLE
HHHHHHCCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEECCCC
APDLVAERVLAFLEARVAAARSRKRESPASKRSRPAATRRRRPATTRRPE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MDAHARAARQGPAASHAGAAAAGTTHGEPMERTEPQQAIARDGTRLHWTHRGSGEPAVVL
CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCCCCCEEEE
TDGIGCAGYVWRALEPALAGRHRTVHWNYRGHGRSGPPADPARVGLEDCVDDLLAVLDAA
ECCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHCCHHHHHHHHHHHHHCC
GERAAVIAGHSMGVQVALELYRRAPERVQALVLVCGAPGRPIDTFHDSPVLRLAFPFARA
CCCEEEEECCCHHHHHHHHHHHHCHHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHH
LVERFPEAVRTGFRVLLPSELAMQYALQFEVDRTRVERADLTRYFDDLSRVEPTLFVRML
HHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
ASAAEHDCLPHLHEVEVPTLVVAGERDSFTPLRLSERMHSEIPGSELLVVPGGTHVAPLE
HHHHHHCCCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEECCCCEECCCC
APDLVAERVLAFLEARVAAARSRKRESPASKRSRPAATRRRRPATTRRPE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA