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The map label for this gene is sodB [H]

Identifier: 220917115

GI number: 220917115

Start: 2266033

End: 2266638

Strand: Direct

Name: sodB [H]

Synonym: A2cp1_2012

Alternate gene names: 220917115

Gene position: 2266033-2266638 (Clockwise)

Preceding gene: 220917113

Following gene: 220917116

Centisome position: 45.06

GC content: 67.0

Gene sequence:

>606_bases
ATGGCAGACGTGAAGCGCTACACCCCGCACGACTTCTCCAAGGTCCGCGGCCTCACCGGCATCTCGGACAAGCAGATCGA
GGAGCACCTCAAGCTGTACGAGGGCTACGTGAAGCGCACCAACGCGCTCACCGAGAAGCTCCAGGGGCTGTGCAACGAGG
GGAAGGCCGCGGGCGCCGATCCGGTGTTCGCGGAGCTCACCCGCCGCCTCGGCTTCGAGTACTCCGGCATGGTGAACCAC
GAGTACTACTTCGCGAACCTCGCCCCGGGCGCGCAGGCCGAGCCGCCGGCCGGCGGCAAGCTCCGCAAGGCCATCGAGGC
GTCGTTCGGCAAGTACGAGACGTGGCTCGCCGACTTCCGCGCCATCGCCACCATGCCGGGCATCGGCTGGGCCATGACGT
TCCAGGATCCGAACACCGGCTGGCTCTCCAACCACTGGCTCACGCTGCACGAGAACAACGTGCCGGTGGGCTTCCGGCCG
GTGCTGGCGCTGGATGGCTGGGAGCACGCGTTCATGCGCGACTACCTCGCCACCGAGCGCGCGAAGTACGTGGACGCGTT
CTTCAAGAACGTGAACTGGGAGGCCGTCGAGAAGCGGATCGCGTAG

Upstream 100 bases:

>100_bases
CCGTTCGGCGCCTTGACACATACGGGGCGGATTCATAAGTCCCGGCCACCGCATCTCGAACGGAATTCACTGCCCGGCCC
AGGGGCCGACGGAGGCAATC

Downstream 100 bases:

>100_bases
CGCGATCCCCCGGCGTCCCCGCGGCCCGGATCGCGCGAGCGGTCCGGGCCGTCGTGCGTCCGGGCCCGCGCTGACCTCGC
GTCAGCCCGCGAACCGGGGC

Product: manganese and iron superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 200

Protein sequence:

>201_residues
MADVKRYTPHDFSKVRGLTGISDKQIEEHLKLYEGYVKRTNALTEKLQGLCNEGKAAGADPVFAELTRRLGFEYSGMVNH
EYYFANLAPGAQAEPPAGGKLRKAIEASFGKYETWLADFRAIATMPGIGWAMTFQDPNTGWLSNHWLTLHENNVPVGFRP
VLALDGWEHAFMRDYLATERAKYVDAFFKNVNWEAVEKRIA

Sequences:

>Translated_201_residues
MADVKRYTPHDFSKVRGLTGISDKQIEEHLKLYEGYVKRTNALTEKLQGLCNEGKAAGADPVFAELTRRLGFEYSGMVNH
EYYFANLAPGAQAEPPAGGKLRKAIEASFGKYETWLADFRAIATMPGIGWAMTFQDPNTGWLSNHWLTLHENNVPVGFRP
VLALDGWEHAFMRDYLATERAKYVDAFFKNVNWEAVEKRIA
>Mature_200_residues
ADVKRYTPHDFSKVRGLTGISDKQIEEHLKLYEGYVKRTNALTEKLQGLCNEGKAAGADPVFAELTRRLGFEYSGMVNHE
YYFANLAPGAQAEPPAGGKLRKAIEASFGKYETWLADFRAIATMPGIGWAMTFQDPNTGWLSNHWLTLHENNVPVGFRPV
LALDGWEHAFMRDYLATERAKYVDAFFKNVNWEAVEKRIA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=196, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI67782305, Length=196, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=6e-12,
Organism=Escherichia coli, GI1787946, Length=187, Percent_Identity=33.1550802139037, Blast_Score=64, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=28.2828282828283, Blast_Score=63, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6321796, Length=184, Percent_Identity=29.8913043478261, Blast_Score=72, Evalue=6e-14,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22735; Mature: 22604

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADVKRYTPHDFSKVRGLTGISDKQIEEHLKLYEGYVKRTNALTEKLQGLCNEGKAAGAD
CCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PVFAELTRRLGFEYSGMVNHEYYFANLAPGAQAEPPAGGKLRKAIEASFGKYETWLADFR
HHHHHHHHHHCCCCCCEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
AIATMPGIGWAMTFQDPNTGWLSNHWLTLHENNVPVGFRPVLALDGWEHAFMRDYLATER
HHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHH
AKYVDAFFKNVNWEAVEKRIA
HHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure 
ADVKRYTPHDFSKVRGLTGISDKQIEEHLKLYEGYVKRTNALTEKLQGLCNEGKAAGAD
CCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
PVFAELTRRLGFEYSGMVNHEYYFANLAPGAQAEPPAGGKLRKAIEASFGKYETWLADFR
HHHHHHHHHHCCCCCCEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
AIATMPGIGWAMTFQDPNTGWLSNHWLTLHENNVPVGFRPVLALDGWEHAFMRDYLATER
HHHHCCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHHHH
AKYVDAFFKNVNWEAVEKRIA
HHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]