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The map label for this gene is ihfA

Identifier: 220917097

GI number: 220917097

Start: 2250738

End: 2251079

Strand: Direct

Name: ihfA

Synonym: A2cp1_1994

Alternate gene names: 220917097

Gene position: 2250738-2251079 (Clockwise)

Preceding gene: 220917096

Following gene: 220917099

Centisome position: 44.75

GC content: 64.62

Gene sequence:

>342_bases
GTGACCAAGGCCGACATCATCGAGAGCGTCTACGAGAAGGTGGGCTTCTCCAAGAAGGAGGCCGCCGAGATCGTCGAGAT
GGTCTTCGACACCATCAAGGAGACGCTCGAACGCGGCGAGAAGATCAAGATCAGCGGCTTCGGCAACTTCATCGTGCGGG
ACAAGAAGTCCCGCGTCGGCCGCAACCCGCAGACCGGCGAGGAGATCGAGATCAGCGCGCGCCGCGTGCTGACGTTCCGC
CCGAGCCAGGTGCTGAAGAACGCGCTCAACGGCGAGGTCTCCGACGAGACCACCGAGGGCGCGGACGACGACGACGACGA
GGAGGGCGAGGGCGACGAGTAG

Upstream 100 bases:

>100_bases
ATCGCCCGCGGGGCGCTAGCGAAGGTTTGACACGTTGGGGCAAATAGGCTAACGAATTCGGGACTTAGCCGACGCCGCCC
GCGGGGATGGGAGCGACACC

Downstream 100 bases:

>100_bases
CGCCCCCGCCCCCGGTCGCCAGCCCCTCAGATACCGTTGACGCGGCCGGCGGCCGCCGCCGGCGCGTCCACGCCGTTCAC
CGGCGCGACCGCGTCGGGCT

Product: integration host factor subunit alpha

Products: NA

Alternate protein names: IHF-alpha

Number of amino acids: Translated: 113; Mature: 112

Protein sequence:

>113_residues
MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVGRNPQTGEEIEISARRVLTFR
PSQVLKNALNGEVSDETTEGADDDDDEEGEGDE

Sequences:

>Translated_113_residues
MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVGRNPQTGEEIEISARRVLTFR
PSQVLKNALNGEVSDETTEGADDDDDEEGEGDE
>Mature_112_residues
TKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVGRNPQTGEEIEISARRVLTFRP
SQVLKNALNGEVSDETTEGADDDDDEEGEGDE

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family

Homologues:

Organism=Escherichia coli, GI1788005, Length=97, Percent_Identity=53.6082474226804, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=36.6666666666667, Blast_Score=77, Evalue=4e-16,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=39.3258426966292, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=32.967032967033, Blast_Score=62, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IHFA_ANAD2 (B8J836)

Other databases:

- EMBL:   CP001359
- RefSeq:   YP_002492401.1
- ProteinModelPortal:   B8J836
- SMR:   B8J836
- GeneID:   7300121
- GenomeReviews:   CP001359_GR
- KEGG:   acp:A2cp1_1994
- HOGENOM:   HBG705085
- ProtClustDB:   PRK00285
- GO:   GO:0006350
- HAMAP:   MF_00380
- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684
- Gene3D:   G3DSA:4.10.520.10
- PRINTS:   PR01727
- SMART:   SM00411
- TIGRFAMs:   TIGR00987

Pfam domain/function: PF00216 Bac_DNA_binding; SSF47729 IHF_like_DNA_bnd

EC number: NA

Molecular weight: Translated: 12614; Mature: 12483

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG
CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHCC
RNPQTGEEIEISARRVLTFRPSQVLKNALNGEVSDETTEGADDDDDEEGEGDE
CCCCCCCEEEHHHHHHEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TKADIIESVYEKVGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRVG
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCHHHCC
RNPQTGEEIEISARRVLTFRPSQVLKNALNGEVSDETTEGADDDDDEEGEGDE
CCCCCCCEEEHHHHHHEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA