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The map label for this gene is scdA [H]

Identifier: 220916928

GI number: 220916928

Start: 2037889

End: 2038584

Strand: Reverse

Name: scdA [H]

Synonym: A2cp1_1824

Alternate gene names: 220916928

Gene position: 2038584-2037889 (Counterclockwise)

Preceding gene: 220916930

Following gene: 220916927

Centisome position: 40.53

GC content: 72.56

Gene sequence:

>696_bases
ATGCCCGCCATCGACCGCAACGCCACCGTCGCCGAGATCGTCACCGCCCACGCCGTCACCGCCCGCATCTTCCAGAAGCA
CCGCATCGACTTCTGCTGCCACGGCGATGTCAGCGTCGCCGAGGCCTGCCGCCCGCGCGCGCTCGACCCGGACACGGTCT
TCGCCGAGCTCGAGGCGTCGCTCCCCCAGGCGAACGGCGACGAGGATCCCCGCGCGCTCTCCACCTTCGCGCTCGTCGCC
CGCATCGTGGACCGCCACCACGCCTACCTGCGTCGGACCCTGCCGTTCCTCGAGCCGCTCGCGCACAAGGTCGCGAGCGT
CCACGGGGACCACAACCCTCGCCTGCTCGGCGTGCGCGACGCGTTCCTCGAGCTGGCCGCCGCGCTCGAGCCGCACCTCG
ACCACGAGGAGGCGGTGCTGTTCCCCGCGCTCCTCTCGCCGGCCCCGGACCGCGAGATCCTCCGCAAGGAGCTCGAGGGA
ATGATGAGCGACCACCTCCAGGTCGGCGCGCTGCTCGAGCGGATCCGCGCGCTCTCCGAGGGCTTCACCGTGCCGGAGTG
GGGCTGCCGCAGCTACCGCGTGCTCATGAGCGAGCTGGAGACGCTCGAGACCGACGTGCTCCGCCACGTCCACCTCGAGA
ACCACGTGCTCATGCCGCGCTTCGCCGGGCGCGCGACCGCCGAGGCGCGGGGCTGA

Upstream 100 bases:

>100_bases
CCCGCCGCGGCGCGCATCGGCGCATTCCGGCCCGGAAACCGGGGGATCGGCATCCGGCACGGCCCGTGCTCTGGGCTCCC
CCGAGGAGAAACGAACGAAC

Downstream 100 bases:

>100_bases
TGGCCCGCGCCACCGACGCCCTGCGCGCCACGCGCGCGGGGATCCGGGCGCGGCTGCAGGAGGTGGCGGAGAAGGCGGGC
GCGGTCACCTCCGGCCCGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MPAIDRNATVAEIVTAHAVTARIFQKHRIDFCCHGDVSVAEACRPRALDPDTVFAELEASLPQANGDEDPRALSTFALVA
RIVDRHHAYLRRTLPFLEPLAHKVASVHGDHNPRLLGVRDAFLELAAALEPHLDHEEAVLFPALLSPAPDREILRKELEG
MMSDHLQVGALLERIRALSEGFTVPEWGCRSYRVLMSELETLETDVLRHVHLENHVLMPRFAGRATAEARG

Sequences:

>Translated_231_residues
MPAIDRNATVAEIVTAHAVTARIFQKHRIDFCCHGDVSVAEACRPRALDPDTVFAELEASLPQANGDEDPRALSTFALVA
RIVDRHHAYLRRTLPFLEPLAHKVASVHGDHNPRLLGVRDAFLELAAALEPHLDHEEAVLFPALLSPAPDREILRKELEG
MMSDHLQVGALLERIRALSEGFTVPEWGCRSYRVLMSELETLETDVLRHVHLENHVLMPRFAGRATAEARG
>Mature_230_residues
PAIDRNATVAEIVTAHAVTARIFQKHRIDFCCHGDVSVAEACRPRALDPDTVFAELEASLPQANGDEDPRALSTFALVAR
IVDRHHAYLRRTLPFLEPLAHKVASVHGDHNPRLLGVRDAFLELAAALEPHLDHEEAVLFPALLSPAPDREILRKELEGM
MSDHLQVGALLERIRALSEGFTVPEWGCRSYRVLMSELETLETDVLRHVHLENHVLMPRFAGRATAEARG

Specific function: Involved in peptidoglycan cross-linking. Required for normal cell growth and development [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scdA family [H]

Homologues:

Organism=Escherichia coli, GI1790654, Length=215, Percent_Identity=28.8372093023256, Blast_Score=93, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 25728; Mature: 25597

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAIDRNATVAEIVTAHAVTARIFQKHRIDFCCHGDVSVAEACRPRALDPDTVFAELEAS
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHCCCCCCCHHHHHHHHHHH
LPQANGDEDPRALSTFALVARIVDRHHAYLRRTLPFLEPLAHKVASVHGDHNPRLLGVRD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHH
AFLELAAALEPHLDHEEAVLFPALLSPAPDREILRKELEGMMSDHLQVGALLERIRALSE
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFTVPEWGCRSYRVLMSELETLETDVLRHVHLENHVLMPRFAGRATAEARG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHCCCCCCCCCC
>Mature Secondary Structure 
PAIDRNATVAEIVTAHAVTARIFQKHRIDFCCHGDVSVAEACRPRALDPDTVFAELEAS
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHCCCCCCCHHHHHHHHHHH
LPQANGDEDPRALSTFALVARIVDRHHAYLRRTLPFLEPLAHKVASVHGDHNPRLLGVRD
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHH
AFLELAAALEPHLDHEEAVLFPALLSPAPDREILRKELEGMMSDHLQVGALLERIRALSE
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GFTVPEWGCRSYRVLMSELETLETDVLRHVHLENHVLMPRFAGRATAEARG
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA