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The map label for this gene is sigW [H]

Identifier: 220916801

GI number: 220916801

Start: 1889507

End: 1890490

Strand: Reverse

Name: sigW [H]

Synonym: A2cp1_1696

Alternate gene names: 220916801

Gene position: 1890490-1889507 (Counterclockwise)

Preceding gene: 220916802

Following gene: 220916800

Centisome position: 37.59

GC content: 75.2

Gene sequence:

>984_bases
ATGACCACGCCTCCAGAGCCGACCCCTTCCCTCGCCGGCGCCGTCCAGGCGTCCTGGCACCGCTTCCTCGACACCTACGA
GCCGCTGCGCCCGGAGCTGTACCGGTACTGCCGCAGCCTGGCGCGCAGCCCCTGGGACGCGGACGACCTGGTGCAGGACG
CGATGGCGCGGGCGTTCGTGACGCTCGGCTGCATGGACGGCCCGCCGGAGAACCCGCGGGCCTGGCTGTTCCGGGTGGCG
TCGAACCTGTGGATCGACCGGCTCCGGCGGACGCGCGAGGACGCCGGGGACGTGCCGGAGGGCGCGACCGCGCCCGAGCC
GAGGGCGTCGCGCGAGGCGGCCGGCACGCTCATCGGCCGGCTGTCGCCACAGGAGCGCGCCGCGGTGGTGCTGAAGGAGG
CGTTCGACCTCTCGCTCGAGGAGATCGCCGAGGCGCTCGCCACCAGCGTCGGGGCGGTGAAGGCGGCGCTCCACCGCGGC
CGCGGGAAGCTGGCCGGGCCGGACGAGGCGGTCACGGCGTCCCCGAGCGCGCCGGTGCTCGACGCGTTCTGCGCGGCGTT
CAACGCCGGGGACCTCGAGCGGCTGGTGGCGCTCCTGCTCGACACCGCCAGCGTGGAGGTGGTGCGCGTGCACGCCGAGT
ACGGCCGCGACGCCGCGCGCAAGGGCGTGTTCCAGGGCATGATGTACGGCAGCCGGCGGCTGGCCGGCGTGGACGGCCAG
ACCACCGGCATCGACCCGCGCTACCGCCTCGGCGCCCTCCCCGACCGCCCCCGCTGCGAGGTGCGGCTGCACCGGGGCGA
GCCGGTCATCGTGCACTGGTACGCGCACGCCGACGGCGAGGCGGTCCGCGCGCTCACCCGGCTCGAGACCTCGGGCGACC
GGCTCTCGCGTGTGCGCAACTACTTCTACACGCCGGGCGTCATCGCCGAGGTGTGCGGCGAGCTCGGCCTCCCCTACCGC
ATCAACGGCTACCGCTACTGGTGA

Upstream 100 bases:

>100_bases
CACCCGTCCGCCTGGGCGCGTTTCGGCACCCGGTTGGAGCGCCCGTGACGCAGGAGCGTGCCGCCCGTATCCCGCGGCGG
CATCCATCCGTCTCCACCGC

Downstream 100 bases:

>100_bases
GAGGGATCCCGCCCATGACCGCGCTCCTCCCCGCCGCCCTCGCCGCCGCGCTGCTCGCGGCCAGCCCCGCCGCGCCGAAC
GCCCCGGCGCGCGCGCCCGC

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 327; Mature: 326

Protein sequence:

>327_residues
MTTPPEPTPSLAGAVQASWHRFLDTYEPLRPELYRYCRSLARSPWDADDLVQDAMARAFVTLGCMDGPPENPRAWLFRVA
SNLWIDRLRRTREDAGDVPEGATAPEPRASREAAGTLIGRLSPQERAAVVLKEAFDLSLEEIAEALATSVGAVKAALHRG
RGKLAGPDEAVTASPSAPVLDAFCAAFNAGDLERLVALLLDTASVEVVRVHAEYGRDAARKGVFQGMMYGSRRLAGVDGQ
TTGIDPRYRLGALPDRPRCEVRLHRGEPVIVHWYAHADGEAVRALTRLETSGDRLSRVRNYFYTPGVIAEVCGELGLPYR
INGYRYW

Sequences:

>Translated_327_residues
MTTPPEPTPSLAGAVQASWHRFLDTYEPLRPELYRYCRSLARSPWDADDLVQDAMARAFVTLGCMDGPPENPRAWLFRVA
SNLWIDRLRRTREDAGDVPEGATAPEPRASREAAGTLIGRLSPQERAAVVLKEAFDLSLEEIAEALATSVGAVKAALHRG
RGKLAGPDEAVTASPSAPVLDAFCAAFNAGDLERLVALLLDTASVEVVRVHAEYGRDAARKGVFQGMMYGSRRLAGVDGQ
TTGIDPRYRLGALPDRPRCEVRLHRGEPVIVHWYAHADGEAVRALTRLETSGDRLSRVRNYFYTPGVIAEVCGELGLPYR
INGYRYW
>Mature_326_residues
TTPPEPTPSLAGAVQASWHRFLDTYEPLRPELYRYCRSLARSPWDADDLVQDAMARAFVTLGCMDGPPENPRAWLFRVAS
NLWIDRLRRTREDAGDVPEGATAPEPRASREAAGTLIGRLSPQERAAVVLKEAFDLSLEEIAEALATSVGAVKAALHRGR
GKLAGPDEAVTASPSAPVLDAFCAAFNAGDLERLVALLLDTASVEVVRVHAEYGRDAARKGVFQGMMYGSRRLAGVDGQT
TGIDPRYRLGALPDRPRCEVRLHRGEPVIVHWYAHADGEAVRALTRLETSGDRLSRVRNYFYTPGVIAEVCGELGLPYRI
NGYRYW

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 35941; Mature: 35810

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTPPEPTPSLAGAVQASWHRFLDTYEPLRPELYRYCRSLARSPWDADDLVQDAMARAFV
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TLGCMDGPPENPRAWLFRVASNLWIDRLRRTREDAGDVPEGATAPEPRASREAAGTLIGR
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
LSPQERAAVVLKEAFDLSLEEIAEALATSVGAVKAALHRGRGKLAGPDEAVTASPSAPVL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
DAFCAAFNAGDLERLVALLLDTASVEVVRVHAEYGRDAARKGVFQGMMYGSRRLAGVDGQ
HHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEHHHCHHHHHHHHHHHHHHCCCEECCCCCC
TTGIDPRYRLGALPDRPRCEVRLHRGEPVIVHWYAHADGEAVRALTRLETSGDRLSRVRN
CCCCCCCHHCCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHH
YFYTPGVIAEVCGELGLPYRINGYRYW
HCCCCCHHHHHHHHCCCCEEECCEECC
>Mature Secondary Structure 
TTPPEPTPSLAGAVQASWHRFLDTYEPLRPELYRYCRSLARSPWDADDLVQDAMARAFV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TLGCMDGPPENPRAWLFRVASNLWIDRLRRTREDAGDVPEGATAPEPRASREAAGTLIGR
HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHC
LSPQERAAVVLKEAFDLSLEEIAEALATSVGAVKAALHRGRGKLAGPDEAVTASPSAPVL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
DAFCAAFNAGDLERLVALLLDTASVEVVRVHAEYGRDAARKGVFQGMMYGSRRLAGVDGQ
HHHHHHCCCCCHHHHHHHHHCCCCEEEEEEEHHHCHHHHHHHHHHHHHHCCCEECCCCCC
TTGIDPRYRLGALPDRPRCEVRLHRGEPVIVHWYAHADGEAVRALTRLETSGDRLSRVRN
CCCCCCCHHCCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHHHHHHHCCHHHHHHHHH
YFYTPGVIAEVCGELGLPYRINGYRYW
HCCCCCHHHHHHHHCCCCEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]