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The map label for this gene is rpoE [C]

Identifier: 220916649

GI number: 220916649

Start: 1723370

End: 1723987

Strand: Direct

Name: rpoE [C]

Synonym: A2cp1_1543

Alternate gene names: 220916649

Gene position: 1723370-1723987 (Clockwise)

Preceding gene: 220916648

Following gene: 220916650

Centisome position: 34.27

GC content: 77.35

Gene sequence:

>618_bases
GTGACGGCGCAGCGCAAGCCGGAGGGCGGGGAGGACGCGGGGGCGGCGGACGCCGCCGACGTCGCGGCCGCCCTGCGCGG
CGATCGCGCCGCCCAGCGCGCGCTCTACGACCGGTACCGTCCGGCGGTGCACCGGCTGGCGCGCAGCTTCCCCGCGCTCG
ACGCGGACGACGCCGAGGACGTGGTGCAGGACGCGTTCGTCCGCGCGTTCGCGAGCCTGGCCCGGCTGGAGCAGCCGGCG
CGCTTCGGCGGCTGGCTGCTCACCATCGCCCGCAACCGGGCCATCACCCGCATCGCCCGCGGCCGGGCGCGGAGCCAGCT
CGCCGAGGAGCTGGGGCGCGAGGCCGAGGCGCTGGGGGCGGGCGAGGCCGAGGCCCCGGATCCCGAGGCCGGCGCGGAGC
TGGAGCTGGTGCGCCGGGTGGTGGACGAGCTGCCGGAGGGGCCGGAGAAGGAGACGGTCCGGCTCTTCTACCTGGAGGGC
CAGCTCACCGCGCGCGAGATCGCGGCCAGGCTGGGCGTCGGCAAGAGCGCGATCACCATGCGGCTCGAGCGGTTCCGGGC
CAAGGTGAAGCGTCGGCTGCTGGCCGAGGTGGCCAGGCTGCGGGGTGAGGAGTCCTAG

Upstream 100 bases:

>100_bases
ACCTCGCGCCGGTCGGGCTGGTGGGCGGCGCGATGCTCCTGCGGGAGGCCCGCGCGGCGGGACGGGACGCTCCGACGGGT
CCGTAGTACCCTCCGCGCCG

Downstream 100 bases:

>100_bases
GCACGTGGTCCACCTGACCGAACCCGTCTACGCGAGGCTGATCCGGGGCGAGCTTCCCCCGGACGAGGCGGCGGCCTGGG
CGCGCCACCTCGAGTCCGGC

Product: ECF subfamily RNA polymerase sigma-24 subunit

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTAQRKPEGGEDAGAADAADVAAALRGDRAAQRALYDRYRPAVHRLARSFPALDADDAEDVVQDAFVRAFASLARLEQPA
RFGGWLLTIARNRAITRIARGRARSQLAEELGREAEALGAGEAEAPDPEAGAELELVRRVVDELPEGPEKETVRLFYLEG
QLTAREIAARLGVGKSAITMRLERFRAKVKRRLLAEVARLRGEES

Sequences:

>Translated_205_residues
MTAQRKPEGGEDAGAADAADVAAALRGDRAAQRALYDRYRPAVHRLARSFPALDADDAEDVVQDAFVRAFASLARLEQPA
RFGGWLLTIARNRAITRIARGRARSQLAEELGREAEALGAGEAEAPDPEAGAELELVRRVVDELPEGPEKETVRLFYLEG
QLTAREIAARLGVGKSAITMRLERFRAKVKRRLLAEVARLRGEES
>Mature_204_residues
TAQRKPEGGEDAGAADAADVAAALRGDRAAQRALYDRYRPAVHRLARSFPALDADDAEDVVQDAFVRAFASLARLEQPAR
FGGWLLTIARNRAITRIARGRARSQLAEELGREAEALGAGEAEAPDPEAGAELELVRRVVDELPEGPEKETVRLFYLEGQ
LTAREIAARLGVGKSAITMRLERFRAKVKRRLLAEVARLRGEES

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22428; Mature: 22296

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQRKPEGGEDAGAADAADVAAALRGDRAAQRALYDRYRPAVHRLARSFPALDADDAED
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VVQDAFVRAFASLARLEQPARFGGWLLTIARNRAITRIARGRARSQLAEELGREAEALGA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEAEAPDPEAGAELELVRRVVDELPEGPEKETVRLFYLEGQLTAREIAARLGVGKSAITM
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHH
RLERFRAKVKRRLLAEVARLRGEES
HHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TAQRKPEGGEDAGAADAADVAAALRGDRAAQRALYDRYRPAVHRLARSFPALDADDAED
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VVQDAFVRAFASLARLEQPARFGGWLLTIARNRAITRIARGRARSQLAEELGREAEALGA
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GEAEAPDPEAGAELELVRRVVDELPEGPEKETVRLFYLEGQLTAREIAARLGVGKSAITM
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHH
RLERFRAKVKRRLLAEVARLRGEES
HHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA