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The map label for this gene is ymfN [H]

Identifier: 220916408

GI number: 220916408

Start: 1450346

End: 1452016

Strand: Direct

Name: ymfN [H]

Synonym: A2cp1_1302

Alternate gene names: 220916408

Gene position: 1450346-1452016 (Clockwise)

Preceding gene: 220916407

Following gene: 220916409

Centisome position: 28.84

GC content: 67.98

Gene sequence:

>1671_bases
ATGTCGGCGCCGAGGCGCAGGAACTGGGTCCGGCTCGCCGAGCGGTACGCGCAGGACGTGGTCGATGGGACCGTCCCCGC
GTGCCCCGAGGTGCTCCAGGCGTGCCGCCGGTTCCAGCGCGACCTCACGAACCCCGAGTTCAGGCTCGACCGCGATGCAG
CCAGTCGAGCGTGCACCTTCGTGAACCTCTTCCTCGAGGTCCTCCCGTGGGAGGCCTTCCTCATCGTCAACGTCTTCGGC
TTTCGCCGGAGGGACACCGGGCACCGTCGCTTTACGTTCGTCAACGTCTGGATCGGCAAGGGGAACGGGAAGTCGGCTTT
GGCAGCGGCCCTCGGCCTCTACCTCGCGTTCATGGACGGGGAGCAGGACGCCGAGGTGCTCACCTACGCCTTCAGTCGGG
AGAACACGCGGCACGTCTGGGAGACGGCCAAGCAGATGCTCCGCAGGAAGCAGGGCACCGAGCTGGACGTGGCCAAGGAG
TACGAGATCGAGCTGAACGCGGTGACGCTGTACCAGGCCCGGACCAACTCGGTCTTCAAGGCCAACAGCTCCAACCCCGA
CGCCCAGCACGGCAGCCGGCCGTCGGCGCTGATCATCGACGAGCTGCACACGGTCCGCGATGAGCTGTGGGACACGCTCA
AGGGCGCGATCGTCAAGCGCGCGAACAGCCTCATGCTGACGCTCTCGACGGGCGGCTTCGACATCTCGTCCAAGGGCTTC
AAGGTCTACGAGTACGACCGGAACATCCTGGCCGGCGTCGAGCAGGACGACGACACGTTCGTCCTCATCTACACGGCGCC
GACCGACGATATCTCCGACGAGGCCAACTGGCGGAAGGCCAACCCGTCGCTCGAGGCCGGGATCATCGACATCAGGAAGT
TCCGGGCCACCGCCCGACAGGCCCTCAGCGTGCCCGGTCAGCGGGGCCAGTTCCTCGCCCTGCACATGAACCGCTGGACG
GGGGCCGCCGAGGGCTTCATCGACGTGGCCCGATGGGATGCGCTGCCCAGGACCACGGTGCAGGACTGCATCGATCGCGG
GCTTCCGTGCGTGGTCGGCATGGACCCGGCCGACACGAACGACATCTTCGGGGTGGCGATCGTGTTCTTCGAGGAGCCGG
CGCCGATGCAGCGCCGTTACCACGTCTTCTTCCAGAACCACCTCTCAGAGAGCGGCGTGCAGAGGCACCCGCGCTCCTCC
CTGCTCCGGGACTGGGCCGCGGCCGGCCACCTCACGATCCACCCCGGCCACAGCCTCAGGATCGAGGAGGTCGTCCACCC
GCTGGTCGACCTCTGGCGGACTCTCCCCCAGGCCGAGTTCATCTGGGACCCGAAGTTCGCCAAGGCCGGCGTCGACAGCC
TGCTACGGATGGAGGGCGTCCCCGAGGAGCAGTCGGTCCAGCAGCCGATGACGCCCGCCGAGATGACCGTCCCGCTGCGG
GAGATGGGCGCCGCTGTGAACGAGGGCCGCCTGCTCCACGACGGGAACCCGTGCGTCTCCTGGCAGGTCGGCAACCTCCT
CGTGGAGAGCCGCGGGGCGATCCTCAAGCCGGTGAAGCAGTCGGACACGGCCAAGATCGACGCGCCGATGGCCCTGGTGA
CGGCGTTGAAGCGGGCCTCGGTGATCCCAGTCGGCCACGACGACGGCCCCTTCCTGGCGACCTGGGCCTGA

Upstream 100 bases:

>100_bases
GGCTCATGGCCGAGTTCGGCCTCACCCCAGCCAGCCGCACGAGGCTGGCCGCGCTGAAGACCCCCGAGGCGACCTCGGCG
CTCGCGAGGCTCTTCAACTG

Downstream 100 bases:

>100_bases
TCGTCACGCGATCCGGTCACTTTCGTCGGTGACCGCCTATCTACCCTGTGAAGAAGGCCCCCCGTGCACGCTCGGCCAGG
TCGAGGCGCAGTGGCTCCCG

Product: Terminase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 556; Mature: 555

Protein sequence:

>556_residues
MSAPRRRNWVRLAERYAQDVVDGTVPACPEVLQACRRFQRDLTNPEFRLDRDAASRACTFVNLFLEVLPWEAFLIVNVFG
FRRRDTGHRRFTFVNVWIGKGNGKSALAAALGLYLAFMDGEQDAEVLTYAFSRENTRHVWETAKQMLRRKQGTELDVAKE
YEIELNAVTLYQARTNSVFKANSSNPDAQHGSRPSALIIDELHTVRDELWDTLKGAIVKRANSLMLTLSTGGFDISSKGF
KVYEYDRNILAGVEQDDDTFVLIYTAPTDDISDEANWRKANPSLEAGIIDIRKFRATARQALSVPGQRGQFLALHMNRWT
GAAEGFIDVARWDALPRTTVQDCIDRGLPCVVGMDPADTNDIFGVAIVFFEEPAPMQRRYHVFFQNHLSESGVQRHPRSS
LLRDWAAAGHLTIHPGHSLRIEEVVHPLVDLWRTLPQAEFIWDPKFAKAGVDSLLRMEGVPEEQSVQQPMTPAEMTVPLR
EMGAAVNEGRLLHDGNPCVSWQVGNLLVESRGAILKPVKQSDTAKIDAPMALVTALKRASVIPVGHDDGPFLATWA

Sequences:

>Translated_556_residues
MSAPRRRNWVRLAERYAQDVVDGTVPACPEVLQACRRFQRDLTNPEFRLDRDAASRACTFVNLFLEVLPWEAFLIVNVFG
FRRRDTGHRRFTFVNVWIGKGNGKSALAAALGLYLAFMDGEQDAEVLTYAFSRENTRHVWETAKQMLRRKQGTELDVAKE
YEIELNAVTLYQARTNSVFKANSSNPDAQHGSRPSALIIDELHTVRDELWDTLKGAIVKRANSLMLTLSTGGFDISSKGF
KVYEYDRNILAGVEQDDDTFVLIYTAPTDDISDEANWRKANPSLEAGIIDIRKFRATARQALSVPGQRGQFLALHMNRWT
GAAEGFIDVARWDALPRTTVQDCIDRGLPCVVGMDPADTNDIFGVAIVFFEEPAPMQRRYHVFFQNHLSESGVQRHPRSS
LLRDWAAAGHLTIHPGHSLRIEEVVHPLVDLWRTLPQAEFIWDPKFAKAGVDSLLRMEGVPEEQSVQQPMTPAEMTVPLR
EMGAAVNEGRLLHDGNPCVSWQVGNLLVESRGAILKPVKQSDTAKIDAPMALVTALKRASVIPVGHDDGPFLATWA
>Mature_555_residues
SAPRRRNWVRLAERYAQDVVDGTVPACPEVLQACRRFQRDLTNPEFRLDRDAASRACTFVNLFLEVLPWEAFLIVNVFGF
RRRDTGHRRFTFVNVWIGKGNGKSALAAALGLYLAFMDGEQDAEVLTYAFSRENTRHVWETAKQMLRRKQGTELDVAKEY
EIELNAVTLYQARTNSVFKANSSNPDAQHGSRPSALIIDELHTVRDELWDTLKGAIVKRANSLMLTLSTGGFDISSKGFK
VYEYDRNILAGVEQDDDTFVLIYTAPTDDISDEANWRKANPSLEAGIIDIRKFRATARQALSVPGQRGQFLALHMNRWTG
AAEGFIDVARWDALPRTTVQDCIDRGLPCVVGMDPADTNDIFGVAIVFFEEPAPMQRRYHVFFQNHLSESGVQRHPRSSL
LRDWAAAGHLTIHPGHSLRIEEVVHPLVDLWRTLPQAEFIWDPKFAKAGVDSLLRMEGVPEEQSVQQPMTPAEMTVPLRE
MGAAVNEGRLLHDGNPCVSWQVGNLLVESRGAILKPVKQSDTAKIDAPMALVTALKRASVIPVGHDDGPFLATWA

Specific function: Unknown

COG id: COG4626

COG function: function code R; Phage terminase-like protein, large subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage terminase family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR005021
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF03354 Terminase_1 [H]

EC number: NA

Molecular weight: Translated: 62343; Mature: 62212

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPRRRNWVRLAERYAQDVVDGTVPACPEVLQACRRFQRDLTNPEFRLDRDAASRACTF
CCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH
VNLFLEVLPWEAFLIVNVFGFRRRDTGHRRFTFVNVWIGKGNGKSALAAALGLYLAFMDG
HHHHHHHHCCHHEEEHHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHEECC
EQDAEVLTYAFSRENTRHVWETAKQMLRRKQGTELDVAKEYEIELNAVTLYQARTNSVFK
CCCHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCEEE
ANSSNPDAQHGSRPSALIIDELHTVRDELWDTLKGAIVKRANSLMLTLSTGGFDISSKGF
ECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCC
KVYEYDRNILAGVEQDDDTFVLIYTAPTDDISDEANWRKANPSLEAGIIDIRKFRATARQ
EEEEECCHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHH
ALSVPGQRGQFLALHMNRWTGAAEGFIDVARWDALPRTTVQDCIDRGLPCVVGMDPADTN
HHCCCCCCCCEEEEEECCCCCCHHCHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCCCC
DIFGVAIVFFEEPAPMQRRYHVFFQNHLSESGVQRHPRSSLLRDWAAAGHLTIHPGHSLR
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCEE
IEEVVHPLVDLWRTLPQAEFIWDPKFAKAGVDSLLRMEGVPEEQSVQQPMTPAEMTVPLR
HHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHCCCHH
EMGAAVNEGRLLHDGNPCVSWQVGNLLVESRGAILKPVKQSDTAKIDAPMALVTALKRAS
HHCCHHCCCEEEECCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
VIPVGHDDGPFLATWA
EEECCCCCCCEEEECC
>Mature Secondary Structure 
SAPRRRNWVRLAERYAQDVVDGTVPACPEVLQACRRFQRDLTNPEFRLDRDAASRACTF
CCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHH
VNLFLEVLPWEAFLIVNVFGFRRRDTGHRRFTFVNVWIGKGNGKSALAAALGLYLAFMDG
HHHHHHHHCCHHEEEHHHHHCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHEECC
EQDAEVLTYAFSRENTRHVWETAKQMLRRKQGTELDVAKEYEIELNAVTLYQARTNSVFK
CCCHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEEECCCCEEE
ANSSNPDAQHGSRPSALIIDELHTVRDELWDTLKGAIVKRANSLMLTLSTGGFDISSKGF
ECCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCC
KVYEYDRNILAGVEQDDDTFVLIYTAPTDDISDEANWRKANPSLEAGIIDIRKFRATARQ
EEEEECCHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHCHHHHHHHHHHHHH
ALSVPGQRGQFLALHMNRWTGAAEGFIDVARWDALPRTTVQDCIDRGLPCVVGMDPADTN
HHCCCCCCCCEEEEEECCCCCCHHCHHHHHHHCCCCCHHHHHHHHCCCCEEEECCCCCCC
DIFGVAIVFFEEPAPMQRRYHVFFQNHLSESGVQRHPRSSLLRDWAAAGHLTIHPGHSLR
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEECCCCCEE
IEEVVHPLVDLWRTLPQAEFIWDPKFAKAGVDSLLRMEGVPEEQSVQQPMTPAEMTVPLR
HHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCCHHHHHCCCCCHHHCCCHH
EMGAAVNEGRLLHDGNPCVSWQVGNLLVESRGAILKPVKQSDTAKIDAPMALVTALKRAS
HHCCHHCCCEEEECCCCEEEEECCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC
VIPVGHDDGPFLATWA
EEECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]