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The map label for this gene is yqfA [C]

Identifier: 220916389

GI number: 220916389

Start: 1435480

End: 1436139

Strand: Direct

Name: yqfA [C]

Synonym: A2cp1_1283

Alternate gene names: 220916389

Gene position: 1435480-1436139 (Clockwise)

Preceding gene: 220916388

Following gene: 220916392

Centisome position: 28.54

GC content: 74.39

Gene sequence:

>660_bases
ATGGAACAGGTGATCGACCCGACGGTGCGCCCCGGGAAGCCGCTGCTGCGTGGCGTCTCGCACGAGATCGCCGCCTCCAT
CTCGCTGGCCGCCTGGGTGGCGGTGGCGCTCACGGCCCCGCCGGGCCGGGCCAGCGTCGCCGCCCACGTCTACGGTGCCT
CGCTCTTCACGCTGTTCGCGGTGAGCGCGCTCTACCACCGGCCCATGTGGCCGCCGGGGCCGCGGCTGCTGATGCGGCGC
CTCGACCACTCCGCCATCTTCCTGCTCATCGCCGGCACCTACACGCCCATGTGCCTGCTGCTCGGCGAGAAGGGCACGCT
GGTGCTGGCGCTGGTGTGGACCGGCGCGGTGCTCGGGATCTTCCGCGCGGTGCTCTGGCCGCGGGCGCCGCGGTGGCTCA
GCGCGGCGCTGTACGTGCTGCTCGGCTGGCTCATCCTGCCGCTCCTGCCGGCGGTGGCCCGGGCCGCCGGCACCGGCGGG
CTGGTGCTGCTCGGGCTCGGCGGCCTCGTGTACAGCCTCGGCGCGGTGGTCTACGCCACCAAGCGGCCCAACCCGTTCCC
GGGCGTGTTCGGCTACCACGAGGTCTTCCACGCGATGGTGGTCGCGGCGGCCGCGCTGCACTTCGCGGTGGTGCTGGGCG
CGCTCCGCCGGATCGGCTGA

Upstream 100 bases:

>100_bases
CGGCACCCCCGGTCCGGCGTAGCGTCGGTGGGGTGCGGTGCGCGGCCGTGACACGCGCATGACGCGAGCGGCCTACTCCT
GTTCCGGAGGGAGACGGCTC

Downstream 100 bases:

>100_bases
CCCGCCCGCGGCGAGCGGGTCGCTCAGATCCGCTCGAGCTTCACCATCGCGGCGACGAGCAGGTGGAGCGCGAACAGCGC
CTCCGGCTCGGTGACGGCCG

Product: channel protein, hemolysin III family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MEQVIDPTVRPGKPLLRGVSHEIAASISLAAWVAVALTAPPGRASVAAHVYGASLFTLFAVSALYHRPMWPPGPRLLMRR
LDHSAIFLLIAGTYTPMCLLLGEKGTLVLALVWTGAVLGIFRAVLWPRAPRWLSAALYVLLGWLILPLLPAVARAAGTGG
LVLLGLGGLVYSLGAVVYATKRPNPFPGVFGYHEVFHAMVVAAAALHFAVVLGALRRIG

Sequences:

>Translated_219_residues
MEQVIDPTVRPGKPLLRGVSHEIAASISLAAWVAVALTAPPGRASVAAHVYGASLFTLFAVSALYHRPMWPPGPRLLMRR
LDHSAIFLLIAGTYTPMCLLLGEKGTLVLALVWTGAVLGIFRAVLWPRAPRWLSAALYVLLGWLILPLLPAVARAAGTGG
LVLLGLGGLVYSLGAVVYATKRPNPFPGVFGYHEVFHAMVVAAAALHFAVVLGALRRIG
>Mature_219_residues
MEQVIDPTVRPGKPLLRGVSHEIAASISLAAWVAVALTAPPGRASVAAHVYGASLFTLFAVSALYHRPMWPPGPRLLMRR
LDHSAIFLLIAGTYTPMCLLLGEKGTLVLALVWTGAVLGIFRAVLWPRAPRWLSAALYVLLGWLILPLLPAVARAAGTGG
LVLLGLGGLVYSLGAVVYATKRPNPFPGVFGYHEVFHAMVVAAAALHFAVVLGALRRIG

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Escherichia coli, GI1789266, Length=216, Percent_Identity=32.4074074074074, Blast_Score=92, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 23222; Mature: 23222

Theoretical pI: Translated: 11.13; Mature: 11.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQVIDPTVRPGKPLLRGVSHEIAASISLAAWVAVALTAPPGRASVAAHVYGASLFTLFA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
VSALYHRPMWPPGPRLLMRRLDHSAIFLLIAGTYTPMCLLLGEKGTLVLALVWTGAVLGI
HHHHHHCCCCCCCHHHHHHHHCCHHEEEEEECCCCCEEEEECCCCCEEEHHHHHHHHHHH
FRAVLWPRAPRWLSAALYVLLGWLILPLLPAVARAAGTGGLVLLGLGGLVYSLGAVVYAT
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEC
KRPNPFPGVFGYHEVFHAMVVAAAALHFAVVLGALRRIG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEQVIDPTVRPGKPLLRGVSHEIAASISLAAWVAVALTAPPGRASVAAHVYGASLFTLFA
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
VSALYHRPMWPPGPRLLMRRLDHSAIFLLIAGTYTPMCLLLGEKGTLVLALVWTGAVLGI
HHHHHHCCCCCCCHHHHHHHHCCHHEEEEEECCCCCEEEEECCCCCEEEHHHHHHHHHHH
FRAVLWPRAPRWLSAALYVLLGWLILPLLPAVARAAGTGGLVLLGLGGLVYSLGAVVYAT
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEC
KRPNPFPGVFGYHEVFHAMVVAAAALHFAVVLGALRRIG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]