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The map label for this gene is araC [C]

Identifier: 220916182

GI number: 220916182

Start: 1197712

End: 1198611

Strand: Direct

Name: araC [C]

Synonym: A2cp1_1069

Alternate gene names: 220916182

Gene position: 1197712-1198611 (Clockwise)

Preceding gene: 220916175

Following gene: 220916184

Centisome position: 23.81

GC content: 79.0

Gene sequence:

>900_bases
GTGACGATCGACCCGCCGAGCCCATCGGACCTCGAAGCCTTCGAGGAGGGCCGCGAGCCGCTGCGCGTGACGCGCCTCGA
GGCGCACGCGCGGCGGGCCGGCCCCGCGACGCGGCGGGCCGGCGGCGGGTTCGCACACGCCTACGCCGTCGTGGTGCTGC
TCACCGCGGGACGCTCGCGGGTCGAGCACGCGGGCGCGCTCGAGCTGCGGCCCGGCGACGTCCACGTCATCCCGCCCGGC
GACGCGCACTCGCGGGCGCACTTCGAGGACGCCGAGGGGTACGGGCTCGCCTTCTGGCCGGAGGAGTCCGGCCACTCGCT
GCGGCTGTTCTCGCAGGTGCGCGGCGGCTGCCACCCGGTGCTCCGGCCGCCGCCGGCGCGGCGCCGGCGGATCGAGCGGT
GGCTGCGGGCCATCGAGGAGGAGGCCTCGAGCCGGGACGAGGGGCGCGACGAGGCGCTCGCCGCGCTGCTCCGCCTCGTC
CTGCTCGAGCTGGTCCGCGCCAGCGCGGCCACGCTGCACCCCCGGACCGAGGGATCGAGCCTGGCGCGCCGGGCGCTCGC
GTTCGTGGAGGGGAGCGCGCTCCGCCCGCTGTCGCTGTCCGACGTGGCGCGGGCGGTGGGGCGGACGCCGGCGCACGTCG
CCACCGTGGTGCGGAGCGAGACCGGGCGGACCGTGGGGGAGTGGATCCTCGCGCAGCGCATGGCCGAGGCCCGCCTTCGC
CTGCGCGCCACCGGCGGATCCGTGGAGGCGATCGCGGGGCAGGTGGGCTACGCCGACGTGACGCACTTCATCCGCCAGTT
CCGCCGCGTGCACGGCCGGACGCCGGCGCAGTGGCGGCGCGTACAGGGCCTGGCGCCCGCCCGCCGGCCGCGGCCCCGGC
GCCGCGCCGTCCCGGACTGA

Upstream 100 bases:

>100_bases
CGGCCCTTGCGGGGCGGCGCTCGCGGCGGAGCAGGGTGTAGGGTCCGGGCGCCCGTCCGGAGCGGGTTCCACGCGCCGGG
CCGGGCCGAGGAGGCCGCGC

Downstream 100 bases:

>100_bases
CCGGCGCCCGACCGGCGCGCGTCAGGACGTCGCGTCCCCGCCCGCCACGGCCAGGAAGGCCGCGTACGCGTCGCGGTACC
AGGGGCGGAGCGCCTCCGGC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator AraC Family; Two-Component Response Regulator; Transcriptional Regulator; AraC Family Two Component Transcriptional Regulator; Two Component Transcriptional Regulator AraC Family; Response Regulator Receiver Domain Protein; Transcriptional Regulator Arac Family; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Response Regulator Receiver Protein

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTIDPPSPSDLEAFEEGREPLRVTRLEAHARRAGPATRRAGGGFAHAYAVVVLLTAGRSRVEHAGALELRPGDVHVIPPG
DAHSRAHFEDAEGYGLAFWPEESGHSLRLFSQVRGGCHPVLRPPPARRRRIERWLRAIEEEASSRDEGRDEALAALLRLV
LLELVRASAATLHPRTEGSSLARRALAFVEGSALRPLSLSDVARAVGRTPAHVATVVRSETGRTVGEWILAQRMAEARLR
LRATGGSVEAIAGQVGYADVTHFIRQFRRVHGRTPAQWRRVQGLAPARRPRPRRRAVPD

Sequences:

>Translated_299_residues
MTIDPPSPSDLEAFEEGREPLRVTRLEAHARRAGPATRRAGGGFAHAYAVVVLLTAGRSRVEHAGALELRPGDVHVIPPG
DAHSRAHFEDAEGYGLAFWPEESGHSLRLFSQVRGGCHPVLRPPPARRRRIERWLRAIEEEASSRDEGRDEALAALLRLV
LLELVRASAATLHPRTEGSSLARRALAFVEGSALRPLSLSDVARAVGRTPAHVATVVRSETGRTVGEWILAQRMAEARLR
LRATGGSVEAIAGQVGYADVTHFIRQFRRVHGRTPAQWRRVQGLAPARRPRPRRRAVPD
>Mature_298_residues
TIDPPSPSDLEAFEEGREPLRVTRLEAHARRAGPATRRAGGGFAHAYAVVVLLTAGRSRVEHAGALELRPGDVHVIPPGD
AHSRAHFEDAEGYGLAFWPEESGHSLRLFSQVRGGCHPVLRPPPARRRRIERWLRAIEEEASSRDEGRDEALAALLRLVL
LELVRASAATLHPRTEGSSLARRALAFVEGSALRPLSLSDVARAVGRTPAHVATVVRSETGRTVGEWILAQRMAEARLRL
RATGGSVEAIAGQVGYADVTHFIRQFRRVHGRTPAQWRRVQGLAPARRPRPRRRAVPD

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786251, Length=237, Percent_Identity=26.1603375527426, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32855; Mature: 32724

Theoretical pI: Translated: 11.87; Mature: 11.87

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDPPSPSDLEAFEEGREPLRVTRLEAHARRAGPATRRAGGGFAHAYAVVVLLTAGRSR
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCHH
VEHAGALELRPGDVHVIPPGDAHSRAHFEDAEGYGLAFWPEESGHSLRLFSQVRGGCHPV
HHHCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCC
LRPPPARRRRIERWLRAIEEEASSRDEGRDEALAALLRLVLLELVRASAATLHPRTEGSS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LARRALAFVEGSALRPLSLSDVARAVGRTPAHVATVVRSETGRTVGEWILAQRMAEARLR
HHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LRATGGSVEAIAGQVGYADVTHFIRQFRRVHGRTPAQWRRVQGLAPARRPRPRRRAVPD
HHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TIDPPSPSDLEAFEEGREPLRVTRLEAHARRAGPATRRAGGGFAHAYAVVVLLTAGRSR
CCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHCCCHH
VEHAGALELRPGDVHVIPPGDAHSRAHFEDAEGYGLAFWPEESGHSLRLFSQVRGGCHPV
HHHCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHCCCCCCC
LRPPPARRRRIERWLRAIEEEASSRDEGRDEALAALLRLVLLELVRASAATLHPRTEGSS
CCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
LARRALAFVEGSALRPLSLSDVARAVGRTPAHVATVVRSETGRTVGEWILAQRMAEARLR
HHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LRATGGSVEAIAGQVGYADVTHFIRQFRRVHGRTPAQWRRVQGLAPARRPRPRRRAVPD
HHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA