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The map label for this gene is 220916133

Identifier: 220916133

GI number: 220916133

Start: 1143855

End: 1144796

Strand: Reverse

Name: 220916133

Synonym: A2cp1_1020

Alternate gene names: NA

Gene position: 1144796-1143855 (Counterclockwise)

Preceding gene: 220916134

Following gene: 220916132

Centisome position: 22.76

GC content: 73.57

Gene sequence:

>942_bases
GTGGCGCGCGCGCAGCAGGGCGTGGAGGTCGAGGTGGAGGGGCGGCGGATCCAGCTGCGCAACCTCGACAAGGTCTTCTA
CCCCGAGGCCGGCTTCACCAAGGGTGAGGTGGTGGACTACTACCGCCGCGTCGCCCCCGTGCTCCTGCCGCACCTGCGGG
ATCGGCCGCTCACGCTGAAGCGCTACCCGGAGGGCGTGGACGGGCCGCACTTCTACGAGAAGCGCTGTCCGCGCCACCGC
CCGGACTGGTTCCGGACCGAGGCGATCTGGAGCGAGGGCAACCAGGACTACATCGACTACTGCGTGGTGGACGACCTGTC
CTCGCTGGTGTGGCTCGCCAGCATCGCCGACCTGGAGCTCCACCCCTCGCTGTCGCGGGTGGACGACGTGGAGCGGCCCA
CCGCGCTCGTGTTCGACCTCGACCCGGGCCCGCCCGCCGAGCTGCTCGCCTGCTGCGAGGTGGCGCTGCTGCTGCGGCGG
CTGCTCGCCGCGCTGGGCCTGGAGGCGTTCCCGAAGAGCTCCGGCTCGAAGGGCATGCAGCTGTACGTGCCGCTCTCCGG
CGCCACCTACGCGGACACGAAGCCGTTCGCGCACGCCGTCGCCCGCGTGCTGGAGCGCCGCCACCCGCAGCTCGTGGTCG
AGCGCATGGCGAAGGCGCTCCGCGGCGGCAAGGTGCTGGTGGACTGGAGCCAGAACGACCCGCACAAGACCACCGTCTGC
GTCTACTCGCTCCGGGCGCGGCCGCGCCCCACCGTCTCCACCCCGCTCCGCTGGGCAGAGGTGGAGAAGGCCGTGCGGAC
CCGCGACGCGGGCGGGCTGGTGTTCGAGGCAGGCGCGGTGCTCCGGCGGGTCGAGCGCGTGGGGGACCTGTTCGCCCCGG
TGCTGACGCTGCGCCAGCGCCTGCCCGCCCCGGCGGAGCTCGAGCGGGCGGCCGGCGCGTGA

Upstream 100 bases:

>100_bases
GCCGGCGCGAGGCGAGCGACGCCACGCGCCCGCGGCCGCGGCCCGGACCACCGGCCGGCCCCGCGCCGCGCGCGCGTCGC
GCAAGAAGCGCGGGTGATCC

Downstream 100 bases:

>100_bases
GCCCCATCGGCGGCGCCTGCGGGCGCCCCGGCCGCGGCGGCGGCACGCCTGCGGCGCGTGGCGCGCCCTGCGCCGCGGTC
GCACCTTGTCCTCGGCGCGC

Product: DNA polymerase LigD, polymerase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MARAQQGVEVEVEGRRIQLRNLDKVFYPEAGFTKGEVVDYYRRVAPVLLPHLRDRPLTLKRYPEGVDGPHFYEKRCPRHR
PDWFRTEAIWSEGNQDYIDYCVVDDLSSLVWLASIADLELHPSLSRVDDVERPTALVFDLDPGPPAELLACCEVALLLRR
LLAALGLEAFPKSSGSKGMQLYVPLSGATYADTKPFAHAVARVLERRHPQLVVERMAKALRGGKVLVDWSQNDPHKTTVC
VYSLRARPRPTVSTPLRWAEVEKAVRTRDAGGLVFEAGAVLRRVERVGDLFAPVLTLRQRLPAPAELERAAGA

Sequences:

>Translated_313_residues
MARAQQGVEVEVEGRRIQLRNLDKVFYPEAGFTKGEVVDYYRRVAPVLLPHLRDRPLTLKRYPEGVDGPHFYEKRCPRHR
PDWFRTEAIWSEGNQDYIDYCVVDDLSSLVWLASIADLELHPSLSRVDDVERPTALVFDLDPGPPAELLACCEVALLLRR
LLAALGLEAFPKSSGSKGMQLYVPLSGATYADTKPFAHAVARVLERRHPQLVVERMAKALRGGKVLVDWSQNDPHKTTVC
VYSLRARPRPTVSTPLRWAEVEKAVRTRDAGGLVFEAGAVLRRVERVGDLFAPVLTLRQRLPAPAELERAAGA
>Mature_312_residues
ARAQQGVEVEVEGRRIQLRNLDKVFYPEAGFTKGEVVDYYRRVAPVLLPHLRDRPLTLKRYPEGVDGPHFYEKRCPRHRP
DWFRTEAIWSEGNQDYIDYCVVDDLSSLVWLASIADLELHPSLSRVDDVERPTALVFDLDPGPPAELLACCEVALLLRRL
LAALGLEAFPKSSGSKGMQLYVPLSGATYADTKPFAHAVARVLERRHPQLVVERMAKALRGGKVLVDWSQNDPHKTTVCV
YSLRARPRPTVSTPLRWAEVEKAVRTRDAGGLVFEAGAVLRRVERVGDLFAPVLTLRQRLPAPAELERAAGA

Specific function: Unknown

COG id: COG3285

COG function: function code L; Predicted eukaryotic-type DNA primase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 35133; Mature: 35002

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARAQQGVEVEVEGRRIQLRNLDKVFYPEAGFTKGEVVDYYRRVAPVLLPHLRDRPLTLK
CCCCCCCCEEEECCCEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
RYPEGVDGPHFYEKRCPRHRPDWFRTEAIWSEGNQDYIDYCVVDDLSSLVWLASIADLEL
CCCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
HPSLSRVDDVERPTALVFDLDPGPPAELLACCEVALLLRRLLAALGLEAFPKSSGSKGMQ
CCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCE
LYVPLSGATYADTKPFAHAVARVLERRHPQLVVERMAKALRGGKVLVDWSQNDPHKTTVC
EEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEE
VYSLRARPRPTVSTPLRWAEVEKAVRTRDAGGLVFEAGAVLRRVERVGDLFAPVLTLRQR
EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
LPAPAELERAAGA
CCCCHHHHHHCCC
>Mature Secondary Structure 
ARAQQGVEVEVEGRRIQLRNLDKVFYPEAGFTKGEVVDYYRRVAPVLLPHLRDRPLTLK
CCCCCCCEEEECCCEEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHH
RYPEGVDGPHFYEKRCPRHRPDWFRTEAIWSEGNQDYIDYCVVDDLSSLVWLASIADLEL
CCCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
HPSLSRVDDVERPTALVFDLDPGPPAELLACCEVALLLRRLLAALGLEAFPKSSGSKGMQ
CCCHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCE
LYVPLSGATYADTKPFAHAVARVLERRHPQLVVERMAKALRGGKVLVDWSQNDPHKTTVC
EEEEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEE
VYSLRARPRPTVSTPLRWAEVEKAVRTRDAGGLVFEAGAVLRRVERVGDLFAPVLTLRQR
EEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH
LPAPAELERAAGA
CCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]