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The map label for this gene is ythB [H]

Identifier: 220916111

GI number: 220916111

Start: 1122743

End: 1123759

Strand: Direct

Name: ythB [H]

Synonym: A2cp1_0998

Alternate gene names: 220916111

Gene position: 1122743-1123759 (Clockwise)

Preceding gene: 220916110

Following gene: 220916120

Centisome position: 22.32

GC content: 76.11

Gene sequence:

>1017_bases
GTGACGCCGGCCGACCTGCTGGGCGGGGTGATCCTCGTCGCCGCGGTCCTGTACGCGCTGCTCGGCGGGGCGGACTTCGG
CGCCGGCATCTGGGACCTGCTCGCCGGCGGTCCGCGCAAGAAGGAGCAGCGCGCGCTGATCGAGGAGGCGCTCGGGCCGA
TCTGGGAGGCGAACCACGTCTGGCTGATCCTGATCGTGGTGCTGCTGTTCACGGCGTTCCCGCCGGCGTTCGCGGCCATC
ACCATCGCGCTGTTCGTCCCGCTCATGCTCCTGCTGGTCGGCATCGTGCTCCGCGGCGCGGCGTTCACGTTCCGGACCTA
CGACGCGCCCGAGGACCGCGTGCAGGCGCGCTGGGGGCTCGTGTTCTCCGGGTCGTCGGTGGTGGCGCCGCTCACGCTCG
GCGTCATCGTGGGCGCGCTCGCCTCCGGCGGCTTGGGCGCGGCCGCGCGCGGCGAGGCGCCGTTCGCCTGGGCGGCGCCG
TTCCCGCTGGCGGTGGGCGCGTTCGCCGCCGCGCTGTTCGCGTACGTGGCCGCGGCGTACCTGGCGGTCGAGGCGGGGGG
CGCGCTGCGCGAGGACTTCCGGCGCCGCGCCATCGGCGCGGGCGTGGCGGTGTTCCTGACCGCGGCCCTGTCGGCCGCGC
TCTCCTGGCGCGAGGCGCCGCTCGTGTTCGCCGGGCTGACGCGGCGCGGCTGGTCGATCCCGCTGCACCTCGCCACCGGC
GCCGCGGCGGTCACCGCGTTCGCCGCGCTGTACCGCGGGCAGGTACGCCTGGCGCGCGCCGCGGCGGCGGCGCAGGTCAC
GCTCATCGTGCTCGGCTGGGGCGCGTCGCAGTACCCGTACCTCGTGGTGCCGGACCACACGCTCGCGTCGGCGAGCGCGC
CGCGCGCGACGCAGGTGCCGGTGCTCTGGGCGCTCGCCGCCGGGGCGGTGCTGCTGTTCCCGGCGCTCTACCTGCTGTTC
CGCGTCTTCAAGGGCGAGCGGCCCTTCGCCATCCTCGACCGCGATCGTCCGCGCTGA

Upstream 100 bases:

>100_bases
TCCTCGCCGTGGTGGTGGTGGCGCTGCTCTGGCGCCAGATCGCGAAGAGCCCGCGCGCCGTCGCCCTCGGCCCCGGCGCC
GGCACCGCGGAGGTGCGGCC

Downstream 100 bases:

>100_bases
CGCGGCGAGGCGGCGCCGCTACACCGGGATCCGGCCGCGCAGGTCGGCCGCGCGGTGCGGCCCCTGCTCGGCCACCAGCG
CGCGGGCGGCGTCCAGCTTG

Product: cytochrome bd ubiquinol oxidase subunit II

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 337

Protein sequence:

>338_residues
MTPADLLGGVILVAAVLYALLGGADFGAGIWDLLAGGPRKKEQRALIEEALGPIWEANHVWLILIVVLLFTAFPPAFAAI
TIALFVPLMLLLVGIVLRGAAFTFRTYDAPEDRVQARWGLVFSGSSVVAPLTLGVIVGALASGGLGAAARGEAPFAWAAP
FPLAVGAFAAALFAYVAAAYLAVEAGGALREDFRRRAIGAGVAVFLTAALSAALSWREAPLVFAGLTRRGWSIPLHLATG
AAAVTAFAALYRGQVRLARAAAAAQVTLIVLGWGASQYPYLVVPDHTLASASAPRATQVPVLWALAAGAVLLFPALYLLF
RVFKGERPFAILDRDRPR

Sequences:

>Translated_338_residues
MTPADLLGGVILVAAVLYALLGGADFGAGIWDLLAGGPRKKEQRALIEEALGPIWEANHVWLILIVVLLFTAFPPAFAAI
TIALFVPLMLLLVGIVLRGAAFTFRTYDAPEDRVQARWGLVFSGSSVVAPLTLGVIVGALASGGLGAAARGEAPFAWAAP
FPLAVGAFAAALFAYVAAAYLAVEAGGALREDFRRRAIGAGVAVFLTAALSAALSWREAPLVFAGLTRRGWSIPLHLATG
AAAVTAFAALYRGQVRLARAAAAAQVTLIVLGWGASQYPYLVVPDHTLASASAPRATQVPVLWALAAGAVLLFPALYLLF
RVFKGERPFAILDRDRPR
>Mature_337_residues
TPADLLGGVILVAAVLYALLGGADFGAGIWDLLAGGPRKKEQRALIEEALGPIWEANHVWLILIVVLLFTAFPPAFAAIT
IALFVPLMLLLVGIVLRGAAFTFRTYDAPEDRVQARWGLVFSGSSVVAPLTLGVIVGALASGGLGAAARGEAPFAWAAPF
PLAVGAFAAALFAYVAAAYLAVEAGGALREDFRRRAIGAGVAVFLTAALSAALSWREAPLVFAGLTRRGWSIPLHLATGA
AAVTAFAALYRGQVRLARAAAAAQVTLIVLGWGASQYPYLVVPDHTLASASAPRATQVPVLWALAAGAVLLFPALYLLFR
VFKGERPFAILDRDRPR

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=198, Percent_Identity=29.2929292929293, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 35332; Mature: 35201

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPADLLGGVILVAAVLYALLGGADFGAGIWDLLAGGPRKKEQRALIEEALGPIWEANHV
CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHH
WLILIVVLLFTAFPPAFAAITIALFVPLMLLLVGIVLRGAAFTFRTYDAPEDRVQARWGL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCE
VFSGSSVVAPLTLGVIVGALASGGLGAAARGEAPFAWAAPFPLAVGAFAAALFAYVAAAY
EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
LAVEAGGALREDFRRRAIGAGVAVFLTAALSAALSWREAPLVFAGLTRRGWSIPLHLATG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEHHH
AAAVTAFAALYRGQVRLARAAAAAQVTLIVLGWGASQYPYLVVPDHTLASASAPRATQVP
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEECCCHHHCCCCCCCCCCH
VLWALAAGAVLLFPALYLLFRVFKGERPFAILDRDRPR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC
>Mature Secondary Structure 
TPADLLGGVILVAAVLYALLGGADFGAGIWDLLAGGPRKKEQRALIEEALGPIWEANHV
CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHH
WLILIVVLLFTAFPPAFAAITIALFVPLMLLLVGIVLRGAAFTFRTYDAPEDRVQARWGL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCE
VFSGSSVVAPLTLGVIVGALASGGLGAAARGEAPFAWAAPFPLAVGAFAAALFAYVAAAY
EECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHH
LAVEAGGALREDFRRRAIGAGVAVFLTAALSAALSWREAPLVFAGLTRRGWSIPLHLATG
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEHHH
AAAVTAFAALYRGQVRLARAAAAAQVTLIVLGWGASQYPYLVVPDHTLASASAPRATQVP
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCEEEECCCHHHCCCCCCCCCCH
VLWALAAGAVLLFPALYLLFRVFKGERPFAILDRDRPR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]