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The map label for this gene is yhdW [H]

Identifier: 220916108

GI number: 220916108

Start: 1120092

End: 1120865

Strand: Direct

Name: yhdW [H]

Synonym: A2cp1_0995

Alternate gene names: 220916108

Gene position: 1120092-1120865 (Clockwise)

Preceding gene: 220916106

Following gene: 220916110

Centisome position: 22.27

GC content: 79.59

Gene sequence:

>774_bases
ATGCCCACCCCGAACCGCAGGGCCCCCCGCGCAGACGGCCGCCCGCTCGTGCTCGGCCACCGGGGCGCGAGCGCCGACGC
GCCCGAGAACACGCTCGCCGCCTTCCGCCTGGCCCTCGCGCAGGGCGCCGACGGGGTGGAGCTGGACGTCTGGCGGTGCC
GCACCGGGGAGGTGGTGGTCGTCCACGACGAGGACACCGGGCGCGTGGCCGGCGCGCGGTTCCGGGTGGACGCCACGCCG
CTCGCCGAGCTGCGCGCGCTCGACGTGGGCGCGTGGAAGGGCGAGCGGTTCCGGGGCGCGCGGATCTCGACGCTGCCGGA
GGTGCTGGAGGCGCTCCCGGGGGCGGTGGTGAACGTGGAGCTGAAGTCGCGCGGGCGCGACCTGCGCCTGGCCGAGGCGG
TGGCGCGCGACGTGCGGCGCGCCGGTGCGGGGGGGAGGGTGATCGCCTCCTCCTTCGACTACCGGCTGGTGGCCGCGTTC
CGGCTGGCGGCGCCGGAGGTGCCGGTGGGGCTGCTCTTCGAGCCGGGGCACCGCTGGCGCCTGCGCACGGCGCTCGCCGC
GCGGCTGCTCGGCGCCGCCGCCGTCCACCCGGACGCCTCGCTCGTCACCCCGGCGCGCGCCGAGGCGTGGCGGGCGCGCG
GCCTGGCGGTGAACGCCTGGACCGTGGACGCGCCGGACGAGGTGGCCCGGCTCACCGGGCTCGGTGCGGCCGCCCTCATC
ACCAACGTCCCGGGCCGCACCCGGGCGCAGGTGCGCGCGCTCACCGGCCGCTAG

Upstream 100 bases:

>100_bases
GATCCCGCGGCAGGCGGCGCGCTAGGATAGTCGCGCGACCCTCCGGGCGCCAGGCGGCAAGGCGCCCGGCGGCGCGGAGG
CGCAGGAGCGCGACGCCGGC

Downstream 100 bases:

>100_bases
CGCGCGCGGGAGGGCGGGCGATCGCCGCCGCGCCCGCGCGCGTCCGCCGCCGGGCCCCGCCTATGCGCCGGTCACGATGC
CGCCGGCCGTGTACGGGCTC

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MPTPNRRAPRADGRPLVLGHRGASADAPENTLAAFRLALAQGADGVELDVWRCRTGEVVVVHDEDTGRVAGARFRVDATP
LAELRALDVGAWKGERFRGARISTLPEVLEALPGAVVNVELKSRGRDLRLAEAVARDVRRAGAGGRVIASSFDYRLVAAF
RLAAPEVPVGLLFEPGHRWRLRTALAARLLGAAAVHPDASLVTPARAEAWRARGLAVNAWTVDAPDEVARLTGLGAAALI
TNVPGRTRAQVRALTGR

Sequences:

>Translated_257_residues
MPTPNRRAPRADGRPLVLGHRGASADAPENTLAAFRLALAQGADGVELDVWRCRTGEVVVVHDEDTGRVAGARFRVDATP
LAELRALDVGAWKGERFRGARISTLPEVLEALPGAVVNVELKSRGRDLRLAEAVARDVRRAGAGGRVIASSFDYRLVAAF
RLAAPEVPVGLLFEPGHRWRLRTALAARLLGAAAVHPDASLVTPARAEAWRARGLAVNAWTVDAPDEVARLTGLGAAALI
TNVPGRTRAQVRALTGR
>Mature_256_residues
PTPNRRAPRADGRPLVLGHRGASADAPENTLAAFRLALAQGADGVELDVWRCRTGEVVVVHDEDTGRVAGARFRVDATPL
AELRALDVGAWKGERFRGARISTLPEVLEALPGAVVNVELKSRGRDLRLAEAVARDVRRAGAGGRVIASSFDYRLVAAFR
LAAPEVPVGLLFEPGHRWRLRTALAARLLGAAAVHPDASLVTPARAEAWRARGLAVNAWTVDAPDEVARLTGLGAAALIT
NVPGRTRAQVRALTGR

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=233, Percent_Identity=30.0429184549356, Blast_Score=91, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI17561436, Length=250, Percent_Identity=23.6, Blast_Score=78, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27347; Mature: 27215

Theoretical pI: Translated: 11.73; Mature: 11.73

Prosite motif: PS50007 PIPLC_X_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPNRRAPRADGRPLVLGHRGASADAPENTLAAFRLALAQGADGVELDVWRCRTGEVVV
CCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE
VHDEDTGRVAGARFRVDATPLAELRALDVGAWKGERFRGARISTLPEVLEALPGAVVNVE
EEECCCCCEECEEEEECCCCHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
LKSRGRDLRLAEAVARDVRRAGAGGRVIASSFDYRLVAAFRLAAPEVPVGLLFEPGHRWR
ECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEHHHCCCCCCEEEEECCCCCEE
LRTALAARLLGAAAVHPDASLVTPARAEAWRARGLAVNAWTVDAPDEVARLTGLGAAALI
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEEEEEECCCCHHHHHHHCCCHHHHH
TNVPGRTRAQVRALTGR
HCCCCCCHHEEEEECCC
>Mature Secondary Structure 
PTPNRRAPRADGRPLVLGHRGASADAPENTLAAFRLALAQGADGVELDVWRCRTGEVVV
CCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEE
VHDEDTGRVAGARFRVDATPLAELRALDVGAWKGERFRGARISTLPEVLEALPGAVVNVE
EEECCCCCEECEEEEECCCCHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
LKSRGRDLRLAEAVARDVRRAGAGGRVIASSFDYRLVAAFRLAAPEVPVGLLFEPGHRWR
ECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCEEEEEEHHHCCCCCCEEEEECCCCCEE
LRTALAARLLGAAAVHPDASLVTPARAEAWRARGLAVNAWTVDAPDEVARLTGLGAAALI
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEEEEEECCCCHHHHHHHCCCHHHHH
TNVPGRTRAQVRALTGR
HCCCCCCHHEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]