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The map label for this gene is deoB [H]

Identifier: 220916069

GI number: 220916069

Start: 1075267

End: 1076433

Strand: Direct

Name: deoB [H]

Synonym: A2cp1_0956

Alternate gene names: 220916069

Gene position: 1075267-1076433 (Clockwise)

Preceding gene: 220916068

Following gene: 220916070

Centisome position: 21.38

GC content: 74.21

Gene sequence:

>1167_bases
ATGAACCGCCGCCTCGTCATCCTGGTCGCCGACAGCGCCGGCTGCGGCGCGCTCCCCGACGCCGCCGCCTACGGCGACGC
CGGCTCCGACACGCTGGGCAACACCAGCCGCGCCGTGGGCGGGCTCTCGCTGCCGGTGCTGGGCGCGATGGGCCTCGGCC
ACGTGACCGCCATCCAGGGCGTGCCGCCCGATCCCGCCCCCACCGCGTTCCACGGGCGCATGGCGGAGCGCTCGGAGGGC
AAGGACACCACCACCGGCCACTGGGAGATGATGGGCGTCGTGCTGCGCCAGGGGCTGCGCACGTTCCCGGGCGGCTTCCC
GCCGGAGATCGTCGAGGCGTTCGTGCGGGAGACCGGCGCGCCGGGCGTCCTCGGGAACACCGTCGCGAGCGGCACCGTCA
TCATCCAGGAGCTCGGCGAGGAGCACCAGCGCACCGGCAAGCCGATCGTCTACACCTCGGCCGACTCGGTGTTCCAGGTG
GCGGCCCACACCGACACGGTGCCCCTCGAGACGCTGTACGCCTGGTGCCGGACGGCGCGGCGCATCCTCGACCCGTGGCG
CGTGGCGCGGGTGATCGCGCGGCCGTTCGTGGGGACGCCGGGGAAGTACGCGCGCACGTACGACCGGAAGGACTTCTCCA
TGCCGCCGCCGGCGACGACGGTGCTGGAGCGGCTGGTCGAGGCGGGCGTGCCGGTGGTCGGCGTCGGGAAGATCCCCGAC
ATCTTCGACCGCCGGGGCATCACCGAGGAGATCCACACGGCCGGCAACGCCGACGGGCTGGCCCGCACCGCGGCGCTCCT
CGACCGGGTGGACCGCGGGCTCGTCTTCGTGAACCTGGTGGACTTCGACATGCTCTACGGGCACCGCAACGATCCGGCGG
GCTACGCGCGGGCGCTGGAGGAGCTGGACCGCGCGCTGCCGGCCATCCTCGACCGGCTCGGGCCGGGCGACCTCCTCGCG
CTCACCGCCGATCACGGCTGCGATCCGACCACCCCGTCCACCGATCACTCGCGCGAGCACGTGCCGCTGCTCGTGCACGC
GCCCGGGCGCGGCGGCGGGGACCTCGGCACGCGCACGACGTTCGCCGATCTCGGGGCCACGGTGGCCGAGTACTTCGGCG
TCCGGTCCGACGTCGGCACGAGCTTCCTCGCCGAGGTGACGCGTTGA

Upstream 100 bases:

>100_bases
GCCGGGGCGAGCCGCATCGGCGCCTCCGGCTCGGTGGCGCTGGTGTCCGGCGCCTTCCCGTGACCGCGCCGCGCGGCGCC
CCTGCGGTTAGGATCCGGGC

Downstream 100 bases:

>100_bases
GCGAGGCGGGGGTGGCGGGCGCGGGCGCGGCGGAGCGCGGGGCGGCGCAGGCGCCGGCGCCGGACGCGGGCCGGCTGGAG
CGCGCCCGGTGGGCGGCGGG

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase [H]

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MNRRLVILVADSAGCGALPDAAAYGDAGSDTLGNTSRAVGGLSLPVLGAMGLGHVTAIQGVPPDPAPTAFHGRMAERSEG
KDTTTGHWEMMGVVLRQGLRTFPGGFPPEIVEAFVRETGAPGVLGNTVASGTVIIQELGEEHQRTGKPIVYTSADSVFQV
AAHTDTVPLETLYAWCRTARRILDPWRVARVIARPFVGTPGKYARTYDRKDFSMPPPATTVLERLVEAGVPVVGVGKIPD
IFDRRGITEEIHTAGNADGLARTAALLDRVDRGLVFVNLVDFDMLYGHRNDPAGYARALEELDRALPAILDRLGPGDLLA
LTADHGCDPTTPSTDHSREHVPLLVHAPGRGGGDLGTRTTFADLGATVAEYFGVRSDVGTSFLAEVTR

Sequences:

>Translated_388_residues
MNRRLVILVADSAGCGALPDAAAYGDAGSDTLGNTSRAVGGLSLPVLGAMGLGHVTAIQGVPPDPAPTAFHGRMAERSEG
KDTTTGHWEMMGVVLRQGLRTFPGGFPPEIVEAFVRETGAPGVLGNTVASGTVIIQELGEEHQRTGKPIVYTSADSVFQV
AAHTDTVPLETLYAWCRTARRILDPWRVARVIARPFVGTPGKYARTYDRKDFSMPPPATTVLERLVEAGVPVVGVGKIPD
IFDRRGITEEIHTAGNADGLARTAALLDRVDRGLVFVNLVDFDMLYGHRNDPAGYARALEELDRALPAILDRLGPGDLLA
LTADHGCDPTTPSTDHSREHVPLLVHAPGRGGGDLGTRTTFADLGATVAEYFGVRSDVGTSFLAEVTR
>Mature_388_residues
MNRRLVILVADSAGCGALPDAAAYGDAGSDTLGNTSRAVGGLSLPVLGAMGLGHVTAIQGVPPDPAPTAFHGRMAERSEG
KDTTTGHWEMMGVVLRQGLRTFPGGFPPEIVEAFVRETGAPGVLGNTVASGTVIIQELGEEHQRTGKPIVYTSADSVFQV
AAHTDTVPLETLYAWCRTARRILDPWRVARVIARPFVGTPGKYARTYDRKDFSMPPPATTVLERLVEAGVPVVGVGKIPD
IFDRRGITEEIHTAGNADGLARTAALLDRVDRGLVFVNLVDFDMLYGHRNDPAGYARALEELDRALPAILDRLGPGDLLA
LTADHGCDPTTPSTDHSREHVPLLVHAPGRGGGDLGTRTTFADLGATVAEYFGVRSDVGTSFLAEVTR

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose [H]

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family [H]

Homologues:

Organism=Escherichia coli, GI1790843, Length=396, Percent_Identity=45.2020202020202, Blast_Score=303, Evalue=9e-84,
Organism=Escherichia coli, GI1789781, Length=391, Percent_Identity=30.1790281329923, Blast_Score=122, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124 [H]

Pfam domain/function: PF01676 Metalloenzyme [H]

EC number: =5.4.2.7 [H]

Molecular weight: Translated: 41158; Mature: 41158

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRLVILVADSAGCGALPDAAAYGDAGSDTLGNTSRAVGGLSLPVLGAMGLGHVTAIQG
CCCEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHCCCCHHHHHHCCCCHHEEECC
VPPDPAPTAFHGRMAERSEGKDTTTGHWEMMGVVLRQGLRTFPGGFPPEIVEAFVRETGA
CCCCCCCCCHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
PGVLGNTVASGTVIIQELGEEHQRTGKPIVYTSADSVFQVAAHTDTVPLETLYAWCRTAR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHCCCCCCHHHHHHHHHHHH
RILDPWRVARVIARPFVGTPGKYARTYDRKDFSMPPPATTVLERLVEAGVPVVGVGKIPD
HHHCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCH
IFDRRGITEEIHTAGNADGLARTAALLDRVDRGLVFVNLVDFDMLYGHRNDPAGYARALE
HHHHCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCHHHHHHHHH
ELDRALPAILDRLGPGDLLALTADHGCDPTTPSTDHSREHVPLLVHAPGRGGGDLGTRTT
HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHH
FADLGATVAEYFGVRSDVGTSFLAEVTR
HHHHHHHHHHHHCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRRLVILVADSAGCGALPDAAAYGDAGSDTLGNTSRAVGGLSLPVLGAMGLGHVTAIQG
CCCEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHCCCCHHHHHHCCCCHHEEECC
VPPDPAPTAFHGRMAERSEGKDTTTGHWEMMGVVLRQGLRTFPGGFPPEIVEAFVRETGA
CCCCCCCCCHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
PGVLGNTVASGTVIIQELGEEHQRTGKPIVYTSADSVFQVAAHTDTVPLETLYAWCRTAR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEHHHCCCCCCHHHHHHHHHHHH
RILDPWRVARVIARPFVGTPGKYARTYDRKDFSMPPPATTVLERLVEAGVPVVGVGKIPD
HHHCHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCH
IFDRRGITEEIHTAGNADGLARTAALLDRVDRGLVFVNLVDFDMLYGHRNDPAGYARALE
HHHHCCCHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEHHHHHHCCCCCHHHHHHHHH
ELDRALPAILDRLGPGDLLALTADHGCDPTTPSTDHSREHVPLLVHAPGRGGGDLGTRTT
HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCHH
FADLGATVAEYFGVRSDVGTSFLAEVTR
HHHHHHHHHHHHCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA