Click here to switch to the map view.

The map label for this gene is yahA [C]

Identifier: 220915935

GI number: 220915935

Start: 918139

End: 918996

Strand: Direct

Name: yahA [C]

Synonym: A2cp1_0821

Alternate gene names: 220915935

Gene position: 918139-918996 (Clockwise)

Preceding gene: 220915933

Following gene: 220915939

Centisome position: 18.26

GC content: 73.54

Gene sequence:

>858_bases
ATGAGCGCCGTCGCCTGGCAGTACGGTCCCGAGGGCGTCGAGGCAGAGCTCCACGGTCTCGTCCCGCCGGAGGTGGACCC
CACCCCCGCCGCGCCCATCCCGTTCGACCTGCACACCGTCGAGACGCGCCCGCGCATGCCGCGGCCGCTCGACCTGGACG
AGATCCGCCGCGTGCTCGACGACGGGCGCTTCTGGACCGAGTACCAGGCCATCGTGCACTGCCGCACCGGGCGCACGGTC
GCGTTCGAGGCGCTGGCCCGCTTCCGCCACCGCAGCGGCCGGCCCATCCCGCCGGATCGCGTGTTCCCGCTGCTGCGCGA
CGAGCCGGCGCTCCTGCTCCGCGCCGAGCTGACGCTGAAGCTGCACCAGGTCGAGCACGCGCCCCGGGCGCCAGTGTTCG
TGAACCTCGACCCCGACTCGTGGACCCGCGCCGGCGATCGCCACCAGAACCCGTTCCTGGCGCTGTTCGGCTCGGCGCAG
AACAAGGTGGTGGTGGAGGTGACCGAGGCGCTGGCCCGCACCGAGGCGCTCGCCGCGCGCGACATGCTCGCGTCGCTCCG
CTCGCGGCACGTCACCGTCGCGCTCGACGACGTCGGCGCGGTGGACGGCCTGCTCTCCTTCGAGGCGATGACCGAGGCCG
AGGTGCTGAAGTTCGACCGCTCGCTCATCCCGCGCTTCGAGAACCCGCGCTACCGCGCGCTGGTGCAGGCGCTCACGCGG
ATGGCGCGCGAGGTCGGCGCGCACACCGTGCTCGAGGGCGTCGAGACCACCGCCGAGTTCGTGCTGGCGCGCGACCTCGG
CTTCGACCTGGTGCAGGGCTTCCTGTTCAAGGACCGCGCGCGCGTCGCCGGGCGGTAG

Upstream 100 bases:

>100_bases
TGGCAGCATGTAGGCGCTTGCACGACGTCACCTACCACACCCTAGCTTCGCACACCTTCCTGGCCGTCCCGGGCCGGGAC
ATCGCGCCGGGGTCCCGCCG

Downstream 100 bases:

>100_bases
GAGCGCGTCGGTCCGCGAGCGAAGCGAGCCGCCGGGGCGACCGGCGCGGAAGCGGCGAAGCCGCTCGCGCCGGCGCACGG
GACCCGGCGAGCAGGGCGGG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSAVAWQYGPEGVEAELHGLVPPEVDPTPAAPIPFDLHTVETRPRMPRPLDLDEIRRVLDDGRFWTEYQAIVHCRTGRTV
AFEALARFRHRSGRPIPPDRVFPLLRDEPALLLRAELTLKLHQVEHAPRAPVFVNLDPDSWTRAGDRHQNPFLALFGSAQ
NKVVVEVTEALARTEALAARDMLASLRSRHVTVALDDVGAVDGLLSFEAMTEAEVLKFDRSLIPRFENPRYRALVQALTR
MAREVGAHTVLEGVETTAEFVLARDLGFDLVQGFLFKDRARVAGR

Sequences:

>Translated_285_residues
MSAVAWQYGPEGVEAELHGLVPPEVDPTPAAPIPFDLHTVETRPRMPRPLDLDEIRRVLDDGRFWTEYQAIVHCRTGRTV
AFEALARFRHRSGRPIPPDRVFPLLRDEPALLLRAELTLKLHQVEHAPRAPVFVNLDPDSWTRAGDRHQNPFLALFGSAQ
NKVVVEVTEALARTEALAARDMLASLRSRHVTVALDDVGAVDGLLSFEAMTEAEVLKFDRSLIPRFENPRYRALVQALTR
MAREVGAHTVLEGVETTAEFVLARDLGFDLVQGFLFKDRARVAGR
>Mature_284_residues
SAVAWQYGPEGVEAELHGLVPPEVDPTPAAPIPFDLHTVETRPRMPRPLDLDEIRRVLDDGRFWTEYQAIVHCRTGRTVA
FEALARFRHRSGRPIPPDRVFPLLRDEPALLLRAELTLKLHQVEHAPRAPVFVNLDPDSWTRAGDRHQNPFLALFGSAQN
KVVVEVTEALARTEALAARDMLASLRSRHVTVALDDVGAVDGLLSFEAMTEAEVLKFDRSLIPRFENPRYRALVQALTRM
AREVGAHTVLEGVETTAEFVLARDLGFDLVQGFLFKDRARVAGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1786507, Length=234, Percent_Identity=24.3589743589744, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 31974; Mature: 31843

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVAWQYGPEGVEAELHGLVPPEVDPTPAAPIPFDLHTVETRPRMPRPLDLDEIRRVLD
CCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH
DGRFWTEYQAIVHCRTGRTVAFEALARFRHRSGRPIPPDRVFPLLRDEPALLLRAELTLK
CCCHHHEEHHHEEECCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCEEEEHHHHHH
LHQVEHAPRAPVFVNLDPDSWTRAGDRHQNPFLALFGSAQNKVVVEVTEALARTEALAAR
HHHHCCCCCCCEEEEECCCCHHCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHH
DMLASLRSRHVTVALDDVGAVDGLLSFEAMTEAEVLKFDRSLIPRFENPRYRALVQALTR
HHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
MAREVGAHTVLEGVETTAEFVLARDLGFDLVQGFLFKDRARVAGR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAVAWQYGPEGVEAELHGLVPPEVDPTPAAPIPFDLHTVETRPRMPRPLDLDEIRRVLD
CCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHH
DGRFWTEYQAIVHCRTGRTVAFEALARFRHRSGRPIPPDRVFPLLRDEPALLLRAELTLK
CCCHHHEEHHHEEECCCCHHHHHHHHHHHHCCCCCCCHHHCCHHHCCCCCEEEEHHHHHH
LHQVEHAPRAPVFVNLDPDSWTRAGDRHQNPFLALFGSAQNKVVVEVTEALARTEALAAR
HHHHCCCCCCCEEEEECCCCHHCCCCCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHHHH
DMLASLRSRHVTVALDDVGAVDGLLSFEAMTEAEVLKFDRSLIPRFENPRYRALVQALTR
HHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
MAREVGAHTVLEGVETTAEFVLARDLGFDLVQGFLFKDRARVAGR
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]