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The map label for this gene is 220915907

Identifier: 220915907

GI number: 220915907

Start: 894270

End: 895118

Strand: Direct

Name: 220915907

Synonym: A2cp1_0793

Alternate gene names: NA

Gene position: 894270-895118 (Clockwise)

Preceding gene: 220915906

Following gene: 220915909

Centisome position: 17.78

GC content: 73.62

Gene sequence:

>849_bases
GTGACCGGCGCGGCCAGGGATTTCGAGCCGCACCGGCCGGATCTGGTGCAGGTCGCCTACCGGATGCTGGGCTCGGTGGC
CGAGGCGGAGGACGTGGTGCAGGACGCGTTCCTGCGCTGGAACGCCGCGCCGCGCGACGGGGTCGAGTCGCCGCGCGCGT
TCCTCATCTGCACGGTCACGCGGCTCTGCCTCGACCGCCTGAAGTCCGCGCGCACGCAGCGGGAGGAGTATGTCGGGACC
TGGCTGCCGGAGCCGCTGGTGGAGGCGGAGGGCACGGGGCTGGCGCACGACCTCTCGATCGCGCTGCTCGTCACCCTGCA
GCGCCTCTCGCCGCTCGAGCGCGCCGCGTTCCTGCTCCACGACGTGTTCGACATGGAGTTCGCGGACGTCGCGGGCGTGC
TGGCGCGCTCCGAGGCCGCGGTCCGCCAGCTCGCGGCGCGCGCGCGGGGGCACGTGCGCGAGGCGAGGCCGCGCTTCCGC
GCGTCCGACGAGGAGGCGCGGCGACTCGCCGACGCCTTCCAGGCGGCGCTGACGAGCGGCGACCTCGGGACGCTCTCGAG
GCTGCTCGCGGAGGACGCGGTGTTCTACGCGGACGGCGGCGGCAAGCGCGCGGCGGTGCTCCAGCCGATCGAGGGCCGGG
CCGCCATCGTGGAGTTCCTCTCGAAGATCGTGAAGCACCCCTCGTTCCCGGGCGCGAAGGCCTACCAGCGCGCCTGGATC
AACGGCATGCCCGGATTCGTGGTGCACGGTCCCGAGGGCGTCGAGACCCTGGCGATCGAGATCGGCGACGGGCGCGTGGT
GGGGATCTACGCCGTCCGCAACCCGGACAAGCTCCGCCACCTCTCGTAG

Upstream 100 bases:

>100_bases
GGCTCTACCCGACGTTGAAGTACGCGATGGGCCACGGCAAGTCGTGCCAGCGCGTGCACGTCGGCGACCTGCCGGTCGCG
GTGGTGCGGGGGGCGGCGGC

Downstream 100 bases:

>100_bases
GCGTGCCTGCGGGCTCGCACGAGTCTCACGACCTGCCCGCGTTGGCTCGGGCGGGGCGGCGCGGCGGGCTGCGCGCGCAC
CCCGCCGGATCACGAGACGG

Product: RNA polymerase sigma factor SigJ

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigJ; RNA Polymerase ECF-Subfamily Sigma Factor; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor; ECF-Sigma Factor; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase Sigma-70 Factor; Sigma Factor Sigma; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase; Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor; AlteRNAtive RNA Polymerase Sigma Factor SigJ; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma-24 Factor Protein; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor Family; ECF-Type Sigma Factor; RNA Polymerase Sigma-70 ECF Type; RNA Polymerase Sigma-70 Factor Protein; RNA Polymerase Sigma Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Subunit; AlteRNAtive RNA Polymerase Sigma Factor; ECF-Family Protein RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70-Like Factor; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTGAARDFEPHRPDLVQVAYRMLGSVAEAEDVVQDAFLRWNAAPRDGVESPRAFLICTVTRLCLDRLKSARTQREEYVGT
WLPEPLVEAEGTGLAHDLSIALLVTLQRLSPLERAAFLLHDVFDMEFADVAGVLARSEAAVRQLAARARGHVREARPRFR
ASDEEARRLADAFQAALTSGDLGTLSRLLAEDAVFYADGGGKRAAVLQPIEGRAAIVEFLSKIVKHPSFPGAKAYQRAWI
NGMPGFVVHGPEGVETLAIEIGDGRVVGIYAVRNPDKLRHLS

Sequences:

>Translated_282_residues
MTGAARDFEPHRPDLVQVAYRMLGSVAEAEDVVQDAFLRWNAAPRDGVESPRAFLICTVTRLCLDRLKSARTQREEYVGT
WLPEPLVEAEGTGLAHDLSIALLVTLQRLSPLERAAFLLHDVFDMEFADVAGVLARSEAAVRQLAARARGHVREARPRFR
ASDEEARRLADAFQAALTSGDLGTLSRLLAEDAVFYADGGGKRAAVLQPIEGRAAIVEFLSKIVKHPSFPGAKAYQRAWI
NGMPGFVVHGPEGVETLAIEIGDGRVVGIYAVRNPDKLRHLS
>Mature_281_residues
TGAARDFEPHRPDLVQVAYRMLGSVAEAEDVVQDAFLRWNAAPRDGVESPRAFLICTVTRLCLDRLKSARTQREEYVGTW
LPEPLVEAEGTGLAHDLSIALLVTLQRLSPLERAAFLLHDVFDMEFADVAGVLARSEAAVRQLAARARGHVREARPRFRA
SDEEARRLADAFQAALTSGDLGTLSRLLAEDAVFYADGGGKRAAVLQPIEGRAAIVEFLSKIVKHPSFPGAKAYQRAWIN
GMPGFVVHGPEGVETLAIEIGDGRVVGIYAVRNPDKLRHLS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30845; Mature: 30713

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAARDFEPHRPDLVQVAYRMLGSVAEAEDVVQDAFLRWNAAPRDGVESPRAFLICTVT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
RLCLDRLKSARTQREEYVGTWLPEPLVEAEGTGLAHDLSIALLVTLQRLSPLERAAFLLH
HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHH
DVFDMEFADVAGVLARSEAAVRQLAARARGHVREARPRFRASDEEARRLADAFQAALTSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
DLGTLSRLLAEDAVFYADGGGKRAAVLQPIEGRAAIVEFLSKIVKHPSFPGAKAYQRAWI
CHHHHHHHHHHHCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
NGMPGFVVHGPEGVETLAIEIGDGRVVGIYAVRNPDKLRHLS
CCCCCEEEECCCCCEEEEEEECCCEEEEEEEECCCHHHCCCC
>Mature Secondary Structure 
TGAARDFEPHRPDLVQVAYRMLGSVAEAEDVVQDAFLRWNAAPRDGVESPRAFLICTVT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
RLCLDRLKSARTQREEYVGTWLPEPLVEAEGTGLAHDLSIALLVTLQRLSPLERAAFLLH
HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHH
DVFDMEFADVAGVLARSEAAVRQLAARARGHVREARPRFRASDEEARRLADAFQAALTSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
DLGTLSRLLAEDAVFYADGGGKRAAVLQPIEGRAAIVEFLSKIVKHPSFPGAKAYQRAWI
CHHHHHHHHHHHCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
NGMPGFVVHGPEGVETLAIEIGDGRVVGIYAVRNPDKLRHLS
CCCCCEEEECCCCCEEEEEEECCCEEEEEEEECCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA