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The map label for this gene is ygcJ [H]

Identifier: 220915897

GI number: 220915897

Start: 879755

End: 880996

Strand: Direct

Name: ygcJ [H]

Synonym: A2cp1_0781

Alternate gene names: 220915897

Gene position: 879755-880996 (Clockwise)

Preceding gene: 220915896

Following gene: 220915898

Centisome position: 17.49

GC content: 70.85

Gene sequence:

>1242_bases
ATGAGCCGATTCGTTCAGATTCACACGCTGACCTCGTACCCTGCCTCGCTCCTGAACCGCGACGATGCGGGGTTCGCGAA
GCGCATCCCGTTCGGTGGCGTCACGCGGACCCGGATCTCGTCCCAGTGCCTGAAGCGCCACTGGCGCACGTTCGAGGGGG
AGGAGGCGCTGTCCGGCCTGGGGCAGCCGATGTCGGTCCGCTCGCGCTACACGTTCGAGGAGTTCGTGGTGCAGCCGCTG
GTGGACGAGGGTGTCCCCGCAGCGCTCGCGCGCGAGGTCACCCGGGCGCTCATGAACGAGGTGCTCGGGAAGAGCGCCAA
GGCGGCGAAGGAGGACGCCAAGAACGGTGAGGAGAAGGAGGCGCAGAAGGACGCCGAGCCCGACCCGTCGCTGCAGACCG
GGCAGATCACCGTGCTCGGTCGGCCGGAGGTGGCCTACATGCTCGACGTCGCTCGCGCGATTTGCAGCAAGAAGCCCGAC
GCCGCCAAGATCGCAAAGGCAGTCGCGGACCACCTCGGGGCGTCGGGGCGCGGCAACCTCCGAGAGCTGCGCCTCGGCGC
CGGCCTCGATGCGGCCATGTTCGGACGGATGGTGACGAGCGACATCCTCGCGCGGGGGGACGCCGCCTTGCACGTCGCCC
ACGCGTTCACCGTCCACGCGGAGGCGACCGAGACCGACTACTTCTCCGCCGTCGATGACCTGCCGATGGCGCGGGCCGAG
AACGGTCAGGGCAGCGGCCACATCGGCAACGCCGAGCTCACCTCGGGCCTATTCTACGGCTACGTCGTCATCGACGTGCC
GCTGCTCGTCTCGAACCTCGAAGGCGTGGACCGCAAGGCGTGGGAGAAGGCGGACCGCGGGCTCGCGGGGCAGGTCGTCG
AACGCATGGTCAGGCTGATCGCGACGGTCTCGCCGGGGGCGAAGCTCGGCTCCACCGCGCCACACGCGTATGCGCACCTG
GTGCTCGCCGAGGCCGGCAACGCCCAGCCCAGGACGCTCGCGAACGCGTTCCTGAACCCGATCACGACCAGTCCGCGTCA
GCCGGACCCGGTCGCGGCAGCGTACCGCGCTCTCGCGCAGCACGCCGCGGACCTCGATCGCATGTACGGCCCGGCGTTCC
AGCGCCGGCTCGCGGCGATCGGACCGGCGGATGGCCTGGCTGACGCGCTGCGTGCCACGGCGAGCGCGAGCCTCGCCGAG
GTGGCGGGGTGGGCCGCCGACCAGGTGCGAGGCGGGCGATGA

Upstream 100 bases:

>100_bases
CGTGCTCGGCGACGGTGGCCCTTCCGCAGAGCGAACCCGCCGCGCGCTCGCGCGCAGCTTCTATCAGCAGCTCCCCACGC
AGGACTGACCGAGGACACTC

Downstream 100 bases:

>100_bases
TCGAAACGCTCATCCTCCGCTTCGACGCGCCCCTGCTCGCCTTCGGCGGCGTCGCGGTGGACAACCAGGGCGTGGTCCAG
GACTTCCCCGGCCTCTCCAT

Product: CRISPR-associated protein, Cse4 family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSRFVQIHTLTSYPASLLNRDDAGFAKRIPFGGVTRTRISSQCLKRHWRTFEGEEALSGLGQPMSVRSRYTFEEFVVQPL
VDEGVPAALAREVTRALMNEVLGKSAKAAKEDAKNGEEKEAQKDAEPDPSLQTGQITVLGRPEVAYMLDVARAICSKKPD
AAKIAKAVADHLGASGRGNLRELRLGAGLDAAMFGRMVTSDILARGDAALHVAHAFTVHAEATETDYFSAVDDLPMARAE
NGQGSGHIGNAELTSGLFYGYVVIDVPLLVSNLEGVDRKAWEKADRGLAGQVVERMVRLIATVSPGAKLGSTAPHAYAHL
VLAEAGNAQPRTLANAFLNPITTSPRQPDPVAAAYRALAQHAADLDRMYGPAFQRRLAAIGPADGLADALRATASASLAE
VAGWAADQVRGGR

Sequences:

>Translated_413_residues
MSRFVQIHTLTSYPASLLNRDDAGFAKRIPFGGVTRTRISSQCLKRHWRTFEGEEALSGLGQPMSVRSRYTFEEFVVQPL
VDEGVPAALAREVTRALMNEVLGKSAKAAKEDAKNGEEKEAQKDAEPDPSLQTGQITVLGRPEVAYMLDVARAICSKKPD
AAKIAKAVADHLGASGRGNLRELRLGAGLDAAMFGRMVTSDILARGDAALHVAHAFTVHAEATETDYFSAVDDLPMARAE
NGQGSGHIGNAELTSGLFYGYVVIDVPLLVSNLEGVDRKAWEKADRGLAGQVVERMVRLIATVSPGAKLGSTAPHAYAHL
VLAEAGNAQPRTLANAFLNPITTSPRQPDPVAAAYRALAQHAADLDRMYGPAFQRRLAAIGPADGLADALRATASASLAE
VAGWAADQVRGGR
>Mature_412_residues
SRFVQIHTLTSYPASLLNRDDAGFAKRIPFGGVTRTRISSQCLKRHWRTFEGEEALSGLGQPMSVRSRYTFEEFVVQPLV
DEGVPAALAREVTRALMNEVLGKSAKAAKEDAKNGEEKEAQKDAEPDPSLQTGQITVLGRPEVAYMLDVARAICSKKPDA
AKIAKAVADHLGASGRGNLRELRLGAGLDAAMFGRMVTSDILARGDAALHVAHAFTVHAEATETDYFSAVDDLPMARAEN
GQGSGHIGNAELTSGLFYGYVVIDVPLLVSNLEGVDRKAWEKADRGLAGQVVERMVRLIATVSPGAKLGSTAPHAYAHLV
LAEAGNAQPRTLANAFLNPITTSPRQPDPVAAAYRALAQHAADLDRMYGPAFQRRLAAIGPADGLADALRATASASLAEV
AGWAADQVRGGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=393, Percent_Identity=31.0432569974555, Blast_Score=128, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 43941; Mature: 43810

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFVQIHTLTSYPASLLNRDDAGFAKRIPFGGVTRTRISSQCLKRHWRTFEGEEALSGL
CCCEEEEEEHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHC
GQPMSVRSRYTFEEFVVQPLVDEGVPAALAREVTRALMNEVLGKSAKAAKEDAKNGEEKE
CCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHH
AQKDAEPDPSLQTGQITVLGRPEVAYMLDVARAICSKKPDAAKIAKAVADHLGASGRGNL
HHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCH
RELRLGAGLDAAMFGRMVTSDILARGDAALHVAHAFTVHAEATETDYFSAVDDLPMARAE
HHHHHCCCCCHHHHHHHHHHHHHHCCCHHEEEEHHEEEECCCCCCHHHHHHHHCCCHHCC
NGQGSGHIGNAELTSGLFYGYVVIDVPLLVSNLEGVDRKAWEKADRGLAGQVVERMVRLI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
ATVSPGAKLGSTAPHAYAHLVLAEAGNAQPRTLANAFLNPITTSPRQPDPVAAAYRALAQ
HHCCCCCCCCCCCCHHHHHHHEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
HAADLDRMYGPAFQRRLAAIGPADGLADALRATASASLAEVAGWAADQVRGGR
HHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SRFVQIHTLTSYPASLLNRDDAGFAKRIPFGGVTRTRISSQCLKRHWRTFEGEEALSGL
CCEEEEEEHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHC
GQPMSVRSRYTFEEFVVQPLVDEGVPAALAREVTRALMNEVLGKSAKAAKEDAKNGEEKE
CCCHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHH
AQKDAEPDPSLQTGQITVLGRPEVAYMLDVARAICSKKPDAAKIAKAVADHLGASGRGNL
HHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCH
RELRLGAGLDAAMFGRMVTSDILARGDAALHVAHAFTVHAEATETDYFSAVDDLPMARAE
HHHHHCCCCCHHHHHHHHHHHHHHCCCHHEEEEHHEEEECCCCCCHHHHHHHHCCCHHCC
NGQGSGHIGNAELTSGLFYGYVVIDVPLLVSNLEGVDRKAWEKADRGLAGQVVERMVRLI
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
ATVSPGAKLGSTAPHAYAHLVLAEAGNAQPRTLANAFLNPITTSPRQPDPVAAAYRALAQ
HHCCCCCCCCCCCCHHHHHHHEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
HAADLDRMYGPAFQRRLAAIGPADGLADALRATASASLAEVAGWAADQVRGGR
HHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]