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The map label for this gene is ihfB [H]

Identifier: 220915851

GI number: 220915851

Start: 829372

End: 829719

Strand: Direct

Name: ihfB [H]

Synonym: A2cp1_0734

Alternate gene names: 220915851

Gene position: 829372-829719 (Clockwise)

Preceding gene: 220915850

Following gene: 220915863

Centisome position: 16.49

GC content: 65.52

Gene sequence:

>348_bases
ATGCTGAAGTCGGATCTCATCAACATCCTCGTCGTGAAGCGCGGTGTGACCCAGAAGCAGGCCGAGGCCACCATCGAGAC
GATCTTCGACTCGATGAAGGACGCGCTCTGCAAGGGAGAGAACATCGAGATCCGCGGGCTTGGCGCGTTCCACGTCAAGC
ACTACGACGGCTATCAGGGGCGCAACCCCAAGACCGGAGAGGTGATTCCGGTGAAGCCGAAGCGCGGGATCCTGTTCCGC
ACCGGCAAGGAGCTGCGCGACCGCGTGAACCGGCCGGAGCTGGTGGCGAAGCCGTCGCAGCCCGAAGGCGAGGGCCAGGG
CACACCCCCGGTCGCCGCCGGCGCGTAA

Upstream 100 bases:

>100_bases
ATGCCCGTGGAACCCTTGCTGATTTCGGAGCCTTCGGCTAGGCTCTCCCCATCCCGAGCGGCTTTCCAAGGGTGGGGGCC
GTCAGCGAGCCGGAGTCCCG

Downstream 100 bases:

>100_bases
CCGCGCGGCTTTGCTCGGTGGTGGCGGGGTCGGGCCGCGAGGCCGCGACCCCGCGCTGCGTTCCGGGCCTCAGGCCGCCA
GCGCGACGCGCCCGAGCGGC

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQGRNPKTGEVIPVKPKRGILFR
TGKELRDRVNRPELVAKPSQPEGEGQGTPPVAAGA

Sequences:

>Translated_115_residues
MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQGRNPKTGEVIPVKPKRGILFR
TGKELRDRVNRPELVAKPSQPEGEGQGTPPVAAGA
>Mature_115_residues
MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQGRNPKTGEVIPVKPKRGILFR
TGKELRDRVNRPELVAKPSQPEGEGQGTPPVAAGA

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=34.8314606741573, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=39.5604395604396, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 12578; Mature: 12578

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG
CCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCC
RNPKTGEVIPVKPKRGILFRTGKELRDRVNRPELVAKPSQPEGEGQGTPPVAAGA
CCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLKSDLINILVVKRGVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQG
CCCHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEECCCCCC
RNPKTGEVIPVKPKRGILFRTGKELRDRVNRPELVAKPSQPEGEGQGTPPVAAGA
CCCCCCCEEEECCCCCEEEECCHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA