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The map label for this gene is rnhB [H]

Identifier: 220915421

GI number: 220915421

Start: 335393

End: 336244

Strand: Direct

Name: rnhB [H]

Synonym: A2cp1_0300

Alternate gene names: 220915421

Gene position: 335393-336244 (Clockwise)

Preceding gene: 220915420

Following gene: 220915422

Centisome position: 6.67

GC content: 76.41

Gene sequence:

>852_bases
ATGCGCCCCGAGGATCTCCCCCGCCTGTCCGTCGCCGAGCTGCGCGCCCGGCTGCTCGACCGCGGCGAGGCGCTGGGCGA
CGCGTGCGAGGCGGCGCTCGAGGCGGATCCGCGCGCCGGCGCGCGCGAGGTGCTGCGCCTCGTGCGCAAGCGACGCCGCG
AGAACCGGGCCGAGGGCCAGCGGCTCCGCCACCTGCTCCGCTACGAGGCGGAGCTGTGGGAGCGGGGGCTCGTGCGCGTG
GCCGGCGTCGACGAGGCCGGGATGGCCCCGCTGGCCGGGCCGGTGGTGGCGGGCGCCTGCGTGCTCCCCCTCGACTACCG
GCCGCGCGGCATCGACGACTCGAAGCAGCTCGACCGCGCCGAGCGCGAGCGGCTGGCCGAGGACATCAAGCGGAACGCCG
TCTGCTGGGCGGTGGCGCGGGCCGACGTGGAGGAGATCGATCGCCTGAACATCTACTGGGCGGGCATGCTCGCGCTGCGC
CGCGCGGTGGACGGGCTGTCGGCGCGGCCGGAGCACCTGCTGGTGGACGCGCGCAAGCTGCCCGACCTCCCGTTCCCGCA
GACGCCCATCGTGCACGGCGACGCGCTGTCGCTCACCATCGCCGCCGCCAGCATCCTCGCGAAGACCGCGCGCGACGCGC
TCATGGCGGAGCTGGACCTCGTCCACCCCGGGTATGGGTTCGCGCGGCACAAGGGCTACCCCACCGCCGAGCACTTCGAG
GCGCTCGGCCGGCTGGGCGCCTGCCCCATCCACCGGCGGTCGTTCACGCCGGTGCGCGTGGCGCTCGGCCTCGAGCCGGC
CCAGGGCGACCTGTTCGCGCTGGCGGACGCGGCGGTCGCGGACGACGAGTGA

Upstream 100 bases:

>100_bases
CGCTGCCGGAAGGGCGGCCGGACCTCGCCCATCGCGCGGGTGGTGCAGGCGCAGCGCTCCACCTTCTTCTGCCCCCGCTG
CCAGCGGTAGACTGCGGGCG

Downstream 100 bases:

>100_bases
CCGCGGCGGGTGCGCGGCCGGCGGCGCGCGGCCGGAACTGTATTTGACGCAACCGCGGGTAATCGCTAGAACCAGCCCCG
AGGACGAGCCCGACGGTGCA

Product: ribonuclease HII

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MRPEDLPRLSVAELRARLLDRGEALGDACEAALEADPRAGAREVLRLVRKRRRENRAEGQRLRHLLRYEAELWERGLVRV
AGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERLAEDIKRNAVCWAVARADVEEIDRLNIYWAGMLALR
RAVDGLSARPEHLLVDARKLPDLPFPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFE
ALGRLGACPIHRRSFTPVRVALGLEPAQGDLFALADAAVADDE

Sequences:

>Translated_283_residues
MRPEDLPRLSVAELRARLLDRGEALGDACEAALEADPRAGAREVLRLVRKRRRENRAEGQRLRHLLRYEAELWERGLVRV
AGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERLAEDIKRNAVCWAVARADVEEIDRLNIYWAGMLALR
RAVDGLSARPEHLLVDARKLPDLPFPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFE
ALGRLGACPIHRRSFTPVRVALGLEPAQGDLFALADAAVADDE
>Mature_283_residues
MRPEDLPRLSVAELRARLLDRGEALGDACEAALEADPRAGAREVLRLVRKRRRENRAEGQRLRHLLRYEAELWERGLVRV
AGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRAERERLAEDIKRNAVCWAVARADVEEIDRLNIYWAGMLALR
RAVDGLSARPEHLLVDARKLPDLPFPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFE
ALGRLGACPIHRRSFTPVRVALGLEPAQGDLFALADAAVADDE

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=185, Percent_Identity=52.972972972973, Blast_Score=181, Evalue=5e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 31137; Mature: 31137

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPEDLPRLSVAELRARLLDRGEALGDACEAALEADPRAGAREVLRLVRKRRRENRAEGQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLRHLLRYEAELWERGLVRVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRA
HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHCCEEECCCCCCCCCCCHHHHHHH
ERERLAEDIKRNAVCWAVARADVEEIDRLNIYWAGMLALRRAVDGLSARPEHLLVDARKL
HHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEHHHC
PDLPFPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHH
ALGRLGACPIHRRSFTPVRVALGLEPAQGDLFALADAAVADDE
HHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHCCCC
>Mature Secondary Structure
MRPEDLPRLSVAELRARLLDRGEALGDACEAALEADPRAGAREVLRLVRKRRRENRAEGQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
RLRHLLRYEAELWERGLVRVAGVDEAGMAPLAGPVVAGACVLPLDYRPRGIDDSKQLDRA
HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHCCEEECCCCCCCCCCCHHHHHHH
ERERLAEDIKRNAVCWAVARADVEEIDRLNIYWAGMLALRRAVDGLSARPEHLLVDARKL
HHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEHHHC
PDLPFPQTPIVHGDALSLTIAAASILAKTARDALMAELDLVHPGYGFARHKGYPTAEHFE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHH
ALGRLGACPIHRRSFTPVRVALGLEPAQGDLFALADAAVADDE
HHHHHCCCCCCCCCCCCEEEEEECCCCCCCEEEHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA