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The map label for this gene is ubiD [H]

Identifier: 220914988

GI number: 220914988

Start: 362301

End: 363998

Strand: Reverse

Name: ubiD [H]

Synonym: Mnod_8148

Alternate gene names: 220914988

Gene position: 363998-362301 (Counterclockwise)

Preceding gene: 220914989

Following gene: 220914986

Centisome position: 79.46

GC content: 61.31

Gene sequence:

>1698_bases
ATGGACGCGACTCCGAAGTCCGCTCTGCGCCGCCAGCAGAGCATGCCTGAATTCGTTGCGGCGATGGAGAAGGCCGGTTT
GCTGGTTCGTATCCCCGGCGAGAAGCGTGTCGACGAATTGCCCATGCTGATGGAGCAGCACTACGACAAGGCGATCTTCG
TCGAGCGCATTCAGGATTGCGAATTCTCCTTCCTAGCCAACGCCTATTCCAACCACGCGCAGTACGCCTGGGCGCTCGGC
TGTTCCCGTTCGGAAATCGGCAATGTGACTGCCGAGCTTGCGAAGGGCCGGATCAAGCCCAAGATCGTGGCGACCGCCCC
ATGCAAAGAGGTGATCCTCAAGGGAGCGGACGTGGACCTGTCGCGTCTGCCGCTCTTCCTGCATCACGATCGCGATGGCC
ACGCCTATATCAATGACAATCTTGTGGTGTCGAAGGACCCCGATACGGGGGTGACGGACTGGGGCATCTATCGGTCGATG
TTTCGAACAATCAACGAAAAGAACTTCGACATGACCTGCGCCAGTCATCGCGGGCGGCTGAACGCGCTGAAATATCAGGC
GCGCGGGCAGGACATGCCGATTGCGATCGTCCTCGGCGGGCCGACGCTGGACAAGATCGCGGCACTCGCTGGTGTGCCAC
CAGAGACCGAAGATTTTGACGTGCTGGGCAGCTTCTATGGTGCTCCGGCGGAGCTTGTGAAGTGCGAAACCAGCGATCTC
TTTGTTCCCGCCAACGCCGAGATCGTCCTCGAGGGCGAGGTGATGGCGACAGAGGGATGGGTCTACGACGAAGGGCCGTA
CGGTGAATTCACCGGCATGTATGGCGGTGGCATGAAGCACAATCCGCGTGTCGTCATCCACTGCATGACCTACCGCAAGG
GCGCGATCTACCAGACAGCCACCATCGGCGGGGCGCATCCGGGCTTCACCGACAACATGCTGCAGCTGCCGGCGGTCGAA
AGCGACATCTATGGCGCGCTCTGCGCCGGCGGCATCCACGTGCTCGATGTGCGCTGCCCGGCCCCTGGCCTCTCCAACAT
CGCCTACGCGAGAATCAAGCCGCAGGGCGGCGGCGATGCCAAGCAGGCGCTTGGGATCATGCTCACCTGCTCGAAGCAAG
GGCTGCCCAAGATCGCGATGGTTTTCGATGCCGACGTCGACATCTGGAATGACGAACGCATCGCGCAGTCGATGGCCTTC
CGCTACATGCCCGACCGCGACACGATCATTATTCCCCAATGCAATACGATGTCGACCGATCCCAAGGTGGGCGATCCGGA
CAAGCCATTCGTTTGCTCCAAAATCGGGCTCGATTGCACCATTCCGCTGGTTGGTGACGTCGACCGTTCGGCCTACGACT
GGTCCTCGGCCTGCGATCTCGGGCAGATTCCCAAGGGCGTCGTTTCCATGGACAAGGATGCACTGACGAAAGATATGGAG
GTTTTCATTCGGGCGGCGCCGCGATCATGGAAGGAAATCCTCGAGCACTATCACGGACAACCGTATCGCCCGATCTACCA
AGCGTTCAGCACGTTGAGGCCGCGGCTCGGCCGTCGCTCGGACGCGCCCTGGTACCGCTATGCTTTTCTCGACTCGGGGC
TTGCCGATGCGACGCCGTCAGCGCCGAAACTCTCAAACCACGACCCGCGCCACCAGCCGCACTTCACGCCGCCGCCGCGT
GCGGCAACCGGGGCATAG

Upstream 100 bases:

>100_bases
CGCTGGGGCGAGACGATCTCGCTTTTGGCCGAACCCGAGCGCGACACCGCTTCGGCTCTCGTTGACGCGATAACAACCAA
GTAGCCCGGAGGAGACAGAT

Downstream 100 bases:

>100_bases
ACGGTTAGAGGGAGAGAACAAGACCCTCAACCTGCACCCCGAGCCCATCCGGTGGTGAGCACTCACCCGGCTTTCAGATG
GGGTGCCGCGAGATCGTTGA

Product: Carboxylyase-related protein

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 565; Mature: 565

Protein sequence:

>565_residues
MDATPKSALRRQQSMPEFVAAMEKAGLLVRIPGEKRVDELPMLMEQHYDKAIFVERIQDCEFSFLANAYSNHAQYAWALG
CSRSEIGNVTAELAKGRIKPKIVATAPCKEVILKGADVDLSRLPLFLHHDRDGHAYINDNLVVSKDPDTGVTDWGIYRSM
FRTINEKNFDMTCASHRGRLNALKYQARGQDMPIAIVLGGPTLDKIAALAGVPPETEDFDVLGSFYGAPAELVKCETSDL
FVPANAEIVLEGEVMATEGWVYDEGPYGEFTGMYGGGMKHNPRVVIHCMTYRKGAIYQTATIGGAHPGFTDNMLQLPAVE
SDIYGALCAGGIHVLDVRCPAPGLSNIAYARIKPQGGGDAKQALGIMLTCSKQGLPKIAMVFDADVDIWNDERIAQSMAF
RYMPDRDTIIIPQCNTMSTDPKVGDPDKPFVCSKIGLDCTIPLVGDVDRSAYDWSSACDLGQIPKGVVSMDKDALTKDME
VFIRAAPRSWKEILEHYHGQPYRPIYQAFSTLRPRLGRRSDAPWYRYAFLDSGLADATPSAPKLSNHDPRHQPHFTPPPR
AATGA

Sequences:

>Translated_565_residues
MDATPKSALRRQQSMPEFVAAMEKAGLLVRIPGEKRVDELPMLMEQHYDKAIFVERIQDCEFSFLANAYSNHAQYAWALG
CSRSEIGNVTAELAKGRIKPKIVATAPCKEVILKGADVDLSRLPLFLHHDRDGHAYINDNLVVSKDPDTGVTDWGIYRSM
FRTINEKNFDMTCASHRGRLNALKYQARGQDMPIAIVLGGPTLDKIAALAGVPPETEDFDVLGSFYGAPAELVKCETSDL
FVPANAEIVLEGEVMATEGWVYDEGPYGEFTGMYGGGMKHNPRVVIHCMTYRKGAIYQTATIGGAHPGFTDNMLQLPAVE
SDIYGALCAGGIHVLDVRCPAPGLSNIAYARIKPQGGGDAKQALGIMLTCSKQGLPKIAMVFDADVDIWNDERIAQSMAF
RYMPDRDTIIIPQCNTMSTDPKVGDPDKPFVCSKIGLDCTIPLVGDVDRSAYDWSSACDLGQIPKGVVSMDKDALTKDME
VFIRAAPRSWKEILEHYHGQPYRPIYQAFSTLRPRLGRRSDAPWYRYAFLDSGLADATPSAPKLSNHDPRHQPHFTPPPR
AATGA
>Mature_565_residues
MDATPKSALRRQQSMPEFVAAMEKAGLLVRIPGEKRVDELPMLMEQHYDKAIFVERIQDCEFSFLANAYSNHAQYAWALG
CSRSEIGNVTAELAKGRIKPKIVATAPCKEVILKGADVDLSRLPLFLHHDRDGHAYINDNLVVSKDPDTGVTDWGIYRSM
FRTINEKNFDMTCASHRGRLNALKYQARGQDMPIAIVLGGPTLDKIAALAGVPPETEDFDVLGSFYGAPAELVKCETSDL
FVPANAEIVLEGEVMATEGWVYDEGPYGEFTGMYGGGMKHNPRVVIHCMTYRKGAIYQTATIGGAHPGFTDNMLQLPAVE
SDIYGALCAGGIHVLDVRCPAPGLSNIAYARIKPQGGGDAKQALGIMLTCSKQGLPKIAMVFDADVDIWNDERIAQSMAF
RYMPDRDTIIIPQCNTMSTDPKVGDPDKPFVCSKIGLDCTIPLVGDVDRSAYDWSSACDLGQIPKGVVSMDKDALTKDME
VFIRAAPRSWKEILEHYHGQPYRPIYQAFSTLRPRLGRRSDAPWYRYAFLDSGLADATPSAPKLSNHDPRHQPHFTPPPR
AATGA

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=362, Percent_Identity=30.6629834254144, Blast_Score=127, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6320748, Length=399, Percent_Identity=26.0651629072682, Blast_Score=96, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 62147; Mature: 62147

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATPKSALRRQQSMPEFVAAMEKAGLLVRIPGEKRVDELPMLMEQHYDKAIFVERIQDC
CCCCHHHHHHHHHCCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCC
EFSFLANAYSNHAQYAWALGCSRSEIGNVTAELAKGRIKPKIVATAPCKEVILKGADVDL
CHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCH
SRLPLFLHHDRDGHAYINDNLVVSKDPDTGVTDWGIYRSMFRTINEKNFDMTCASHRGRL
HHCCEEEEECCCCCEEECCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCC
NALKYQARGQDMPIAIVLGGPTLDKIAALAGVPPETEDFDVLGSFYGAPAELVKCETSDL
EEEEEECCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHEEECCCCE
FVPANAEIVLEGEVMATEGWVYDEGPYGEFTGMYGGGMKHNPRVVIHCMTYRKGAIYQTA
EECCCCEEEEECEEEEECCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEE
TIGGAHPGFTDNMLQLPAVESDIYGALCAGGIHVLDVRCPAPGLSNIAYARIKPQGGGDA
ECCCCCCCCCCCCEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECCCCCCH
KQALGIMLTCSKQGLPKIAMVFDADVDIWNDERIAQSMAFRYMPDRDTIIIPQCNTMSTD
HHHCEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
PKVGDPDKPFVCSKIGLDCTIPLVGDVDRSAYDWSSACDLGQIPKGVVSMDKDALTKDME
CCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHH
VFIRAAPRSWKEILEHYHGQPYRPIYQAFSTLRPRLGRRSDAPWYRYAFLDSGLADATPS
HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
APKLSNHDPRHQPHFTPPPRAATGA
CCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDATPKSALRRQQSMPEFVAAMEKAGLLVRIPGEKRVDELPMLMEQHYDKAIFVERIQDC
CCCCHHHHHHHHHCCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHCC
EFSFLANAYSNHAQYAWALGCSRSEIGNVTAELAKGRIKPKIVATAPCKEVILKGADVDL
CHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCCH
SRLPLFLHHDRDGHAYINDNLVVSKDPDTGVTDWGIYRSMFRTINEKNFDMTCASHRGRL
HHCCEEEEECCCCCEEECCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCC
NALKYQARGQDMPIAIVLGGPTLDKIAALAGVPPETEDFDVLGSFYGAPAELVKCETSDL
EEEEEECCCCCCCEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHEEECCCCE
FVPANAEIVLEGEVMATEGWVYDEGPYGEFTGMYGGGMKHNPRVVIHCMTYRKGAIYQTA
EECCCCEEEEECEEEEECCEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEE
TIGGAHPGFTDNMLQLPAVESDIYGALCAGGIHVLDVRCPAPGLSNIAYARIKPQGGGDA
ECCCCCCCCCCCCEECCCCCCHHHHHHHCCCEEEEEEECCCCCCCCEEEEEEECCCCCCH
KQALGIMLTCSKQGLPKIAMVFDADVDIWNDERIAQSMAFRYMPDRDTIIIPQCNTMSTD
HHHCEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
PKVGDPDKPFVCSKIGLDCTIPLVGDVDRSAYDWSSACDLGQIPKGVVSMDKDALTKDME
CCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHH
VFIRAAPRSWKEILEHYHGQPYRPIYQAFSTLRPRLGRRSDAPWYRYAFLDSGLADATPS
HHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
APKLSNHDPRHQPHFTPPPRAATGA
CCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA