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The map label for this gene is allS [H]

Identifier: 220914675

GI number: 220914675

Start: 6128

End: 7060

Strand: Reverse

Name: allS [H]

Synonym: Mnod_7777

Alternate gene names: 220914675

Gene position: 7060-6128 (Counterclockwise)

Preceding gene: 220914678

Following gene: NA

Centisome position: 1.54

GC content: 65.17

Gene sequence:

>933_bases
ATGACGAAGATCACGCTCGAACAATGGCGCATGTTTGTTGCAACCGCGCAACAGGGAAGCTTCCTTCAAGCGGCGGAAAA
ATTGGGAAAGACGCAATCCGCGATCAGCCACGCGATCCGAAAGATGGAGGAAACTCTCGGCCAGGAGCTCTTTGCCATCG
AGGGCCGGCGCGCTCGCCTCACCACCGTGGGAGAGATGATCTATCCCCGCGCTCGCGAGCTCATCGGTCACGCGGCGCAG
ATCGAGAGATTGTGCGTCAGCTTCGATCCGGAGGCCGAAGGGGAGATCTCGATTGCGGTTGACGTCATCTTCCCGATGCA
GCTCCTGCATCGAGCTCTCGAAGAGTACGAGAAGCTGTATCCGCATTTCTCGGTGCGGGTTTGGGAGACGACCCTGTCCG
GGGCGAGCGAGATCCTGGAGGATGGGCGGGCCGTCATCGGCATCGCCGGGCAGCTGCCGCCCGGGACCGTGATGGAACCT
CTTCTGAAAGTGAGTTTTCTCTGCGTCGCCGTCGCCGATCACCCCCTGCATCGGGAGGGCGACCTCACCCACGCGATGCT
CAAGGAGCATCGGCAGATCGTGCTGAGCGATTCCGGCCGGCGCAACCTCAGCAGCGGCTGGCTCGGGGCGCGCAAGCGCT
GGACCGTCGGCCATCTGGCGACCTCGGTGGCCCTCGTGCGCGCGGGACAGGGCTACGCGTGGCTTCCCGAGCATAGTATC
GGTGCAGACATCGCGGCCGGGACGATCCGTCCCCTCCGCCTGCACTCGGGAGGCCGCCGGACGGTCCAGCTCCATCTCGG
CTATACCGAAATCGGCCAGAACCTCCGCCAGGCCCTCGACCTCCTGGGCGTGTTCCGCGATACGGTGGCGGACCATGCTC
CACTCGCGACGCAGGCCGGCTTCGATGTCCCGCCCGCCGCCGTGGCCGGCTGA

Upstream 100 bases:

>100_bases
AGCCTTCATCTGCGTCGCACCCTGCAGACAACTCGCGAAACTGTTGCCGACGAAGTGCGTGGAGGTTAACCGTAGCAGGG
GGTCGTTCCGGGAGGCCGCG

Downstream 100 bases:

>100_bases
CCGCTCCCCCTGTCCCGGGCGCATGCAGCGGCAGCGGAACGCGACCCGAGACCCAGCACAAGACGTCGCGCAGCGACCGC
TTGTCAGCCCCGCTGGACAA

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTKITLEQWRMFVATAQQGSFLQAAEKLGKTQSAISHAIRKMEETLGQELFAIEGRRARLTTVGEMIYPRARELIGHAAQ
IERLCVSFDPEAEGEISIAVDVIFPMQLLHRALEEYEKLYPHFSVRVWETTLSGASEILEDGRAVIGIAGQLPPGTVMEP
LLKVSFLCVAVADHPLHREGDLTHAMLKEHRQIVLSDSGRRNLSSGWLGARKRWTVGHLATSVALVRAGQGYAWLPEHSI
GADIAAGTIRPLRLHSGGRRTVQLHLGYTEIGQNLRQALDLLGVFRDTVADHAPLATQAGFDVPPAAVAG

Sequences:

>Translated_310_residues
MTKITLEQWRMFVATAQQGSFLQAAEKLGKTQSAISHAIRKMEETLGQELFAIEGRRARLTTVGEMIYPRARELIGHAAQ
IERLCVSFDPEAEGEISIAVDVIFPMQLLHRALEEYEKLYPHFSVRVWETTLSGASEILEDGRAVIGIAGQLPPGTVMEP
LLKVSFLCVAVADHPLHREGDLTHAMLKEHRQIVLSDSGRRNLSSGWLGARKRWTVGHLATSVALVRAGQGYAWLPEHSI
GADIAAGTIRPLRLHSGGRRTVQLHLGYTEIGQNLRQALDLLGVFRDTVADHAPLATQAGFDVPPAAVAG
>Mature_309_residues
TKITLEQWRMFVATAQQGSFLQAAEKLGKTQSAISHAIRKMEETLGQELFAIEGRRARLTTVGEMIYPRARELIGHAAQI
ERLCVSFDPEAEGEISIAVDVIFPMQLLHRALEEYEKLYPHFSVRVWETTLSGASEILEDGRAVIGIAGQLPPGTVMEPL
LKVSFLCVAVADHPLHREGDLTHAMLKEHRQIVLSDSGRRNLSSGWLGARKRWTVGHLATSVALVRAGQGYAWLPEHSIG
ADIAAGTIRPLRLHSGGRRTVQLHLGYTEIGQNLRQALDLLGVFRDTVADHAPLATQAGFDVPPAAVAG

Specific function: Positive regulator essential for the expression of allD operon. Binds to the allD promoter [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789492, Length=259, Percent_Identity=30.1158301158301, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI145693105, Length=240, Percent_Identity=30.8333333333333, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082024, Length=236, Percent_Identity=31.7796610169492, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1786713, Length=239, Percent_Identity=29.2887029288703, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787949, Length=232, Percent_Identity=25.4310344827586, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786508, Length=248, Percent_Identity=24.5967741935484, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI157672245, Length=187, Percent_Identity=28.3422459893048, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788748, Length=243, Percent_Identity=26.7489711934156, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788481, Length=257, Percent_Identity=29.1828793774319, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33982; Mature: 33850

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKITLEQWRMFVATAQQGSFLQAAEKLGKTQSAISHAIRKMEETLGQELFAIEGRRARL
CCCEEHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
TTVGEMIYPRARELIGHAAQIERLCVSFDPEAEGEISIAVDVIFPMQLLHRALEEYEKLY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
PHFSVRVWETTLSGASEILEDGRAVIGIAGQLPPGTVMEPLLKVSFLCVAVADHPLHREG
CCCEEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
DLTHAMLKEHRQIVLSDSGRRNLSSGWLGARKRWTVGHLATSVALVRAGQGYAWLPEHSI
CHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCC
GADIAAGTIRPLRLHSGGRRTVQLHLGYTEIGQNLRQALDLLGVFRDTVADHAPLATQAG
CCCHHHCCCEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
FDVPPAAVAG
CCCCCHHCCC
>Mature Secondary Structure 
TKITLEQWRMFVATAQQGSFLQAAEKLGKTQSAISHAIRKMEETLGQELFAIEGRRARL
CCEEHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
TTVGEMIYPRARELIGHAAQIERLCVSFDPEAEGEISIAVDVIFPMQLLHRALEEYEKLY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHC
PHFSVRVWETTLSGASEILEDGRAVIGIAGQLPPGTVMEPLLKVSFLCVAVADHPLHREG
CCCEEEEEHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
DLTHAMLKEHRQIVLSDSGRRNLSSGWLGARKRWTVGHLATSVALVRAGQGYAWLPEHSI
CHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCC
GADIAAGTIRPLRLHSGGRRTVQLHLGYTEIGQNLRQALDLLGVFRDTVADHAPLATQAG
CCCHHHCCCEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
FDVPPAAVAG
CCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA