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The map label for this gene is rlpA [H]

Identifier: 220905559

GI number: 220905559

Start: 2765838

End: 2766554

Strand: Direct

Name: rlpA [H]

Synonym: Ddes_2298

Alternate gene names: 220905559

Gene position: 2765838-2766554 (Clockwise)

Preceding gene: 220905558

Following gene: 220905563

Centisome position: 96.26

GC content: 60.81

Gene sequence:

>717_bases
ATGACACCGGCCCTCCGCACCCTGCGGAACTGCCTCATCCTTGCTCTCTGTGCCCTGCTCTTTTCCGGCTGCGGCTCACG
CGGAGGCGGCTCGTGGCGCAAGGGCGGCGTTACCGGCACCAAACCCTACACCGTACGCGGCAAGACCTATTATCCGCTCA
AGTCTGCCCACGGCTTTGTGGAAGTGGGCGTGGCCTCGTGGTACGGCCCGGGCTTTCACGGTAAAAAAACGGCCAATGGT
GAACGCTACAATCAGTATGCAATGACCGCCGCCCACAAGCTCTTGCCGTTAGGTACAAAGGTGCGCGTGACCCACCTGGG
CAACGGGCGCAGCATCATTGTGCGCATCAATGACCGTGGTCCCTTTGTAGGCGACCGCGTTATCGATCTTTCGCGCGCCG
CGGCAACACGTCTTAATATTGTGGGACCGGGCACGGGACGGGTACGCATCCAGAGCCTGGGCGGCGTGCCGCAGATGCGC
GACGACGGCGATTTTACAGGGGCCTATTATGTGCAGGTGGGCGCTTTCGCCAACAAGAGCAATGCCGCCCGTCTGACCCA
GACCCTTGCCAAGGCGGGCCACAAGAGCCGGATGCGCTACGGCAGCAACAATATGTGGAACGTGCAGGCAGGGCCGTGGC
CGGATTCTTTCGGGGCGCAAAAGCAGCTTGAAATTTTTAGCATTCTCTATCCCGGCTCATTTGTCGTGGGCGACTAG

Upstream 100 bases:

>100_bases
GCCTGCTCAACGAAGGCACCTCCGGCATCTGTGCCAGCTGCGGCAAAAGCGCCCAGTTCCCCTGCCTGCCCTACCTCGCC
CCTGTGGAGATTGACAAAGT

Downstream 100 bases:

>100_bases
AACATTTCAACCAGTAACCGCTCTGGCGCGGGAGACCTTGCAACTGTTCCGGAGGCTGTGCGGCCCAGACGCCCATCATC
ACTTTTACGTCCAGCAATCC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MTPALRTLRNCLILALCALLFSGCGSRGGGSWRKGGVTGTKPYTVRGKTYYPLKSAHGFVEVGVASWYGPGFHGKKTANG
ERYNQYAMTAAHKLLPLGTKVRVTHLGNGRSIIVRINDRGPFVGDRVIDLSRAAATRLNIVGPGTGRVRIQSLGGVPQMR
DDGDFTGAYYVQVGAFANKSNAARLTQTLAKAGHKSRMRYGSNNMWNVQAGPWPDSFGAQKQLEIFSILYPGSFVVGD

Sequences:

>Translated_238_residues
MTPALRTLRNCLILALCALLFSGCGSRGGGSWRKGGVTGTKPYTVRGKTYYPLKSAHGFVEVGVASWYGPGFHGKKTANG
ERYNQYAMTAAHKLLPLGTKVRVTHLGNGRSIIVRINDRGPFVGDRVIDLSRAAATRLNIVGPGTGRVRIQSLGGVPQMR
DDGDFTGAYYVQVGAFANKSNAARLTQTLAKAGHKSRMRYGSNNMWNVQAGPWPDSFGAQKQLEIFSILYPGSFVVGD
>Mature_237_residues
TPALRTLRNCLILALCALLFSGCGSRGGGSWRKGGVTGTKPYTVRGKTYYPLKSAHGFVEVGVASWYGPGFHGKKTANGE
RYNQYAMTAAHKLLPLGTKVRVTHLGNGRSIIVRINDRGPFVGDRVIDLSRAAATRLNIVGPGTGRVRIQSLGGVPQMRD
DGDFTGAYYVQVGAFANKSNAARLTQTLAKAGHKSRMRYGSNNMWNVQAGPWPDSFGAQKQLEIFSILYPGSFVVGD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=130, Percent_Identity=40.7692307692308, Blast_Score=94, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 25654; Mature: 25523

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPALRTLRNCLILALCALLFSGCGSRGGGSWRKGGVTGTKPYTVRGKTYYPLKSAHGFV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEECCHHCCCCEE
EVGVASWYGPGFHGKKTANGERYNQYAMTAAHKLLPLGTKVRVTHLGNGRSIIVRINDRG
EECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCC
PFVGDRVIDLSRAAATRLNIVGPGTGRVRIQSLGGVPQMRDDGDFTGAYYVQVGAFANKS
CCCCCHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC
NAARLTQTLAKAGHKSRMRYGSNNMWNVQAGPWPDSFGAQKQLEIFSILYPGSFVVGD
CHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCEEEECC
>Mature Secondary Structure 
TPALRTLRNCLILALCALLFSGCGSRGGGSWRKGGVTGTKPYTVRGKTYYPLKSAHGFV
CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCEECCHHCCCCEE
EVGVASWYGPGFHGKKTANGERYNQYAMTAAHKLLPLGTKVRVTHLGNGRSIIVRINDRG
EECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCC
PFVGDRVIDLSRAAATRLNIVGPGTGRVRIQSLGGVPQMRDDGDFTGAYYVQVGAFANKS
CCCCCHHHHHHHHHHHEEEEECCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCC
NAARLTQTLAKAGHKSRMRYGSNNMWNVQAGPWPDSFGAQKQLEIFSILYPGSFVVGD
CHHHHHHHHHHCCCHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEEEEECCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]