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The map label for this gene is yrrC [H]

Identifier: 220905550

GI number: 220905550

Start: 2756605

End: 2758854

Strand: Direct

Name: yrrC [H]

Synonym: Ddes_2289

Alternate gene names: 220905550

Gene position: 2756605-2758854 (Clockwise)

Preceding gene: 220905549

Following gene: 220905552

Centisome position: 95.93

GC content: 60.49

Gene sequence:

>2250_bases
ATGAAGGACATGCCCCTGCTGCAAGACCCGGATGCCGTGGAAATTTCCGGCACTGTGGAGCGCGTTATCTTTCATAATGA
AGAAAACGGCTATACTGTACTGCGTCTTATGCCTGCCAGCGTCAACAGCGGCGGAGGCGACGGCGGCCTCACGCGCCCGC
GCGACTCCGTAAGCTGCGTGGGTCACATGGTCAATCCGCAGGCGGGCGTACAGATGAAACTCGGCGGCCGTTGGGTCAAT
AATACCCGTTTTGGCCGCCAGATAGAGTTCAGCCACGCTGAAGAAATGCTGCCTGCCACCAGTGAGGGCATACGCCTGTA
TCTGTCTTCAGGGCTTATCAAGGGCGTGGGCGAAGAGATGGCCTCGCGCATCGTCAAGGCGTTCGGCACAGACACCATAC
GGGTGCTGGACGAAGAGCCGGAGCGCCTGCTCAAGGTGCGCGGCGTGGGGCAAAAAAGCCTGGAGCGCATCCGCGCATCG
TGGAGCGAACACCGCGGCATACGCGACCTGCTGCTTTTTCTGCAACCTCACGGCATCACCCCGGCCTATGCTGTACGCAT
CTACCGCGCCTACGGGGCGGACGCCCTGGGCATCGTGCGTGAAAACCCCTATCGCCTTGCCATGGATATCCACGGCATAG
GCTTTGTCACCGCCGATGCCGCGGCCCGCAAGCTGGGCTTCGAGCACGACCACCCCTTGCGCGTACAGGCAGGCACACTC
TACGTGCTGCAAAAAGCCACGGATGACGGCAACGTGTACCTGCCGCAGACCGCGCTTATGGAGGCCGTATGCGCGCAACT
GGGCGTTGACGAGGACCTTGTTTCCGACGCTCTGGCCGCTCTTGAGGCGGACGAGCGCATCGTGCGCGAAGATATGGACA
TGCCCGGCCCTGACGGCACACAGCCTGAAACAGGCGTGTACCTGCGCCGCTATTTTCACTGCGAGTCCAAAACCGCGTTC
TACCTGCAACGGCTCATGCGTTCGCCCAAATCCATTCGTTTTGAAAACCCCGACGCCCTGGTGGACAAGGTGGTGGGTGA
ACTCAACATATCCCTTGCGCCGGAACAGCTTGAGGCCGTGCGTACCTCGGCCCGCAGCAAGGTTATGGTGCTTACGGGCG
GCCCCGGCACAGGCAAGACCACCATCATCAATGCCATTATCAGGCTTTTTGCCGAGGTGCGCGCCCGCATCCTGCTGGCT
GCGCCCACAGGACGCGCCGCCAAGCGTATGGCCGAAACCTCGGGGCGTGAATCCCGCACCATTCACCGCCTGCTGGAATA
CAGCCCCAAGGAGGACGGCTTCGCCCGCAACGAAGACAGTCCTCTGGCCTGCGGCCTGCTGGTGGTGGACGAAGCCTCGA
TGATGGACACCCTGCTTTTTTACCACCTGCTCAAGGCCGTTCCCCTGGGCGCGACCCTTGTACTGGTGGGCGATGTGCAT
CAGCTGCCCTCGGTGGGTCCGGGCAACGTGCTGGCCGACATAATAGCCTCCGGTGTGGTTCCTGTGGTAGAGCTGACCGA
AATATTCCGCCAGTCGGCAGAAAGTGAAATTATCTGCAACGCCCACCTTATCAATCGCGGCGAGGTTCCTTCGCTGGAAT
CCAGCAAAGACCGCCTTTCGGACTTTTACTTCATCCACCAGAATGATCCGGAAAAAGCCGCCGACCTTATGGTCGACCTG
GTGCGCAACCATATTCCGCGCCGCTTCGGGCTTGACCCGGTGGACGACATCCAGGTGCTTACCCCCATGCACAAGGGAGC
TGTGGGCGCGGGACATATGAATACGCGCCTGCAGGAGGCCCTGAACCCCAACGGCCTTGAAGTGCGGCGCGGCGAACGCG
CCTTTCGCCTGCACGACAAGGTCATGCAGATACGCAACAACTACGATAAGGACGTGTTCAACGGCGACATGGGGCGGATC
AGCTTTCTTGACCTTGCCGACCGCACCCTGAGCGTCACCTTTGACGAACGCGTGGTCCCCTATGAATTTGATGAGCTGGA
CGAGCTGGCCCCGGCCTACGCCATATCCATTCACAAATCCCAGGGGTCGGAATATCCCGCCGTGGTCATACCCATCATGA
TGCAGCACTACGTGCTGCTGCAACGCAACCTTATCTATACCGGAGCCACGCGCGGCAAAAAGCTTGTCATTCTGGTGGGC
GAATCCCGCGCTCTCCACATGGCGGTCAAAAACAACAAGACCCGCAAGCGTTACACCCGGCTGGCCGAACGGCTGGCTCC
CGGCGAGTAA

Upstream 100 bases:

>100_bases
CATCGTGCCCGTTCTTGAGGCAATGACTGCCCTGGCCCTGGCAGACGCTCTGCTTTTGCAGCAGCGCATGGGCCTCGGGC
TTTAAGGACATAGCATCGCC

Downstream 100 bases:

>100_bases
CGCCAGGCCGCTTCCGGGGCAGCCACAAGCTGCCACAACCAAACCCGGCTGGCTGAAAACATTTCAGGCCGTCCGCATAA
TGCGGACGGCCTGTTTATCA

Product: helicase, RecD/TraA family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 749; Mature: 749

Protein sequence:

>749_residues
MKDMPLLQDPDAVEISGTVERVIFHNEENGYTVLRLMPASVNSGGGDGGLTRPRDSVSCVGHMVNPQAGVQMKLGGRWVN
NTRFGRQIEFSHAEEMLPATSEGIRLYLSSGLIKGVGEEMASRIVKAFGTDTIRVLDEEPERLLKVRGVGQKSLERIRAS
WSEHRGIRDLLLFLQPHGITPAYAVRIYRAYGADALGIVRENPYRLAMDIHGIGFVTADAAARKLGFEHDHPLRVQAGTL
YVLQKATDDGNVYLPQTALMEAVCAQLGVDEDLVSDALAALEADERIVREDMDMPGPDGTQPETGVYLRRYFHCESKTAF
YLQRLMRSPKSIRFENPDALVDKVVGELNISLAPEQLEAVRTSARSKVMVLTGGPGTGKTTIINAIIRLFAEVRARILLA
APTGRAAKRMAETSGRESRTIHRLLEYSPKEDGFARNEDSPLACGLLVVDEASMMDTLLFYHLLKAVPLGATLVLVGDVH
QLPSVGPGNVLADIIASGVVPVVELTEIFRQSAESEIICNAHLINRGEVPSLESSKDRLSDFYFIHQNDPEKAADLMVDL
VRNHIPRRFGLDPVDDIQVLTPMHKGAVGAGHMNTRLQEALNPNGLEVRRGERAFRLHDKVMQIRNNYDKDVFNGDMGRI
SFLDLADRTLSVTFDERVVPYEFDELDELAPAYAISIHKSQGSEYPAVVIPIMMQHYVLLQRNLIYTGATRGKKLVILVG
ESRALHMAVKNNKTRKRYTRLAERLAPGE

Sequences:

>Translated_749_residues
MKDMPLLQDPDAVEISGTVERVIFHNEENGYTVLRLMPASVNSGGGDGGLTRPRDSVSCVGHMVNPQAGVQMKLGGRWVN
NTRFGRQIEFSHAEEMLPATSEGIRLYLSSGLIKGVGEEMASRIVKAFGTDTIRVLDEEPERLLKVRGVGQKSLERIRAS
WSEHRGIRDLLLFLQPHGITPAYAVRIYRAYGADALGIVRENPYRLAMDIHGIGFVTADAAARKLGFEHDHPLRVQAGTL
YVLQKATDDGNVYLPQTALMEAVCAQLGVDEDLVSDALAALEADERIVREDMDMPGPDGTQPETGVYLRRYFHCESKTAF
YLQRLMRSPKSIRFENPDALVDKVVGELNISLAPEQLEAVRTSARSKVMVLTGGPGTGKTTIINAIIRLFAEVRARILLA
APTGRAAKRMAETSGRESRTIHRLLEYSPKEDGFARNEDSPLACGLLVVDEASMMDTLLFYHLLKAVPLGATLVLVGDVH
QLPSVGPGNVLADIIASGVVPVVELTEIFRQSAESEIICNAHLINRGEVPSLESSKDRLSDFYFIHQNDPEKAADLMVDL
VRNHIPRRFGLDPVDDIQVLTPMHKGAVGAGHMNTRLQEALNPNGLEVRRGERAFRLHDKVMQIRNNYDKDVFNGDMGRI
SFLDLADRTLSVTFDERVVPYEFDELDELAPAYAISIHKSQGSEYPAVVIPIMMQHYVLLQRNLIYTGATRGKKLVILVG
ESRALHMAVKNNKTRKRYTRLAERLAPGE
>Mature_749_residues
MKDMPLLQDPDAVEISGTVERVIFHNEENGYTVLRLMPASVNSGGGDGGLTRPRDSVSCVGHMVNPQAGVQMKLGGRWVN
NTRFGRQIEFSHAEEMLPATSEGIRLYLSSGLIKGVGEEMASRIVKAFGTDTIRVLDEEPERLLKVRGVGQKSLERIRAS
WSEHRGIRDLLLFLQPHGITPAYAVRIYRAYGADALGIVRENPYRLAMDIHGIGFVTADAAARKLGFEHDHPLRVQAGTL
YVLQKATDDGNVYLPQTALMEAVCAQLGVDEDLVSDALAALEADERIVREDMDMPGPDGTQPETGVYLRRYFHCESKTAF
YLQRLMRSPKSIRFENPDALVDKVVGELNISLAPEQLEAVRTSARSKVMVLTGGPGTGKTTIINAIIRLFAEVRARILLA
APTGRAAKRMAETSGRESRTIHRLLEYSPKEDGFARNEDSPLACGLLVVDEASMMDTLLFYHLLKAVPLGATLVLVGDVH
QLPSVGPGNVLADIIASGVVPVVELTEIFRQSAESEIICNAHLINRGEVPSLESSKDRLSDFYFIHQNDPEKAADLMVDL
VRNHIPRRFGLDPVDDIQVLTPMHKGAVGAGHMNTRLQEALNPNGLEVRRGERAFRLHDKVMQIRNNYDKDVFNGDMGRI
SFLDLADRTLSVTFDERVVPYEFDELDELAPAYAISIHKSQGSEYPAVVIPIMMQHYVLLQRNLIYTGATRGKKLVILVG
ESRALHMAVKNNKTRKRYTRLAERLAPGE

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789182, Length=416, Percent_Identity=25.9615384615385, Blast_Score=118, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 82962; Mature: 82962

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDMPLLQDPDAVEISGTVERVIFHNEENGYTVLRLMPASVNSGGGDGGLTRPRDSVSCV
CCCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHH
GHMVNPQAGVQMKLGGRWVNNTRFGRQIEFSHAEEMLPATSEGIRLYLSSGLIKGVGEEM
HHCCCCCCCEEEEECCEEECCCCCCCEEEHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHH
ASRIVKAFGTDTIRVLDEEPERLLKVRGVGQKSLERIRASWSEHRGIRDLLLFLQPHGIT
HHHHHHHHCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
PAYAVRIYRAYGADALGIVRENPYRLAMDIHGIGFVTADAAARKLGFEHDHPLRVQAGTL
HHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCEEEEHHHHHHHCCCCCCCCEEEECCEE
YVLQKATDDGNVYLPQTALMEAVCAQLGVDEDLVSDALAALEADERIVREDMDMPGPDGT
EEEEECCCCCCEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QPETGVYLRRYFHCESKTAFYLQRLMRSPKSIRFENPDALVDKVVGELNISLAPEQLEAV
CCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCCEECHHHHHHH
RTSARSKVMVLTGGPGTGKTTIINAIIRLFAEVRARILLAAPTGRAAKRMAETSGRESRT
HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCHHHH
IHRLLEYSPKEDGFARNEDSPLACGLLVVDEASMMDTLLFYHLLKAVPLGATLVLVGDVH
HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEECHH
QLPSVGPGNVLADIIASGVVPVVELTEIFRQSAESEIICNAHLINRGEVPSLESSKDRLS
HCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHCC
DFYFIHQNDPEKAADLMVDLVRNHIPRRFGLDPVDDIQVLTPMHKGAVGAGHMNTRLQEA
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHCCCCCCCHHHHHHHHH
LNPNGLEVRRGERAFRLHDKVMQIRNNYDKDVFNGDMGRISFLDLADRTLSVTFDERVVP
CCCCCCEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCCEEEEEECCCCCC
YEFDELDELAPAYAISIHKSQGSEYPAVVIPIMMQHYVLLQRNLIYTGATRGKKLVILVG
CCHHHHHHHCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCEEEECCCCCCEEEEEEC
ESRALHMAVKNNKTRKRYTRLAERLAPGE
CCCEEEEEECCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKDMPLLQDPDAVEISGTVERVIFHNEENGYTVLRLMPASVNSGGGDGGLTRPRDSVSCV
CCCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHH
GHMVNPQAGVQMKLGGRWVNNTRFGRQIEFSHAEEMLPATSEGIRLYLSSGLIKGVGEEM
HHCCCCCCCEEEEECCEEECCCCCCCEEEHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHH
ASRIVKAFGTDTIRVLDEEPERLLKVRGVGQKSLERIRASWSEHRGIRDLLLFLQPHGIT
HHHHHHHHCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC
PAYAVRIYRAYGADALGIVRENPYRLAMDIHGIGFVTADAAARKLGFEHDHPLRVQAGTL
HHHHHHHHHHHCCCEEEEEECCCEEEEEEECCCEEEEHHHHHHHCCCCCCCCEEEECCEE
YVLQKATDDGNVYLPQTALMEAVCAQLGVDEDLVSDALAALEADERIVREDMDMPGPDGT
EEEEECCCCCCEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
QPETGVYLRRYFHCESKTAFYLQRLMRSPKSIRFENPDALVDKVVGELNISLAPEQLEAV
CCCCCHHHHHHHCCCCCHHHHHHHHHCCCCCEECCCHHHHHHHHHHHCCCEECHHHHHHH
RTSARSKVMVLTGGPGTGKTTIINAIIRLFAEVRARILLAAPTGRAAKRMAETSGRESRT
HHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCHHHH
IHRLLEYSPKEDGFARNEDSPLACGLLVVDEASMMDTLLFYHLLKAVPLGATLVLVGDVH
HHHHHHCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEECHH
QLPSVGPGNVLADIIASGVVPVVELTEIFRQSAESEIICNAHLINRGEVPSLESSKDRLS
HCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHCC
DFYFIHQNDPEKAADLMVDLVRNHIPRRFGLDPVDDIQVLTPMHKGAVGAGHMNTRLQEA
EEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHCCCCCCCHHHHHHHHH
LNPNGLEVRRGERAFRLHDKVMQIRNNYDKDVFNGDMGRISFLDLADRTLSVTFDERVVP
CCCCCCEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCCEEEEEECCCCCC
YEFDELDELAPAYAISIHKSQGSEYPAVVIPIMMQHYVLLQRNLIYTGATRGKKLVILVG
CCHHHHHHHCCEEEEEEECCCCCCCCEEHHHHHHHHHHHHHHCEEEECCCCCCEEEEEEC
ESRALHMAVKNNKTRKRYTRLAERLAPGE
CCCEEEEEECCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]