| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is yheS [H]
Identifier: 220905465
GI number: 220905465
Start: 2656008
End: 2658017
Strand: Direct
Name: yheS [H]
Synonym: Ddes_2203
Alternate gene names: 220905465
Gene position: 2656008-2658017 (Clockwise)
Preceding gene: 220905464
Following gene: 220905466
Centisome position: 92.43
GC content: 60.3
Gene sequence:
>2010_bases GTGAAGATAACGATTCAGGAACTTTCCAAGTCATTTGGCGGCCGGGATATTTTCAGCAATTTTTCGCTGGAGGTGGACTC CGGCGTGCGTTTGTGCGTGTGCGGTCCCAACGGCACGGGTAAGTCCACGCTTTTACGCCTGCTGGCCGGGGTGGATGCCC CGGACGGCGGCCGTGTCATCCTGCCGCGCGGTTGCCGCATGGGCTATGTGGAACAGGAGCTTTCAGAAGAAGCCCTGGAC ACACCCCTGCTGACCTACGTGCTGGACGTGCTGCATGACTGGAGCGATTTTTGGGCGCAATGGGAAGATGCCGCCGCCAG CAAGGACGAAGCCCTGCTGACCGAGCTTATGCACCGGCAGAGCGAGCTTGAAGCGCGCTACGGCTATAATCCCGAGCACC GGGCCAAGGCTGTGCTTTCAGGACTGGGCTTTGCCGAGCGCAAGTGGCACCGCACCCTGCGCGAACTTTCGGGCGGCTGG CGCGAGCGCGCCAAGCTGGCCCGTGTGCTTACCGCCGGGGCCGATGTACTCCTGCTGGACGAACCCACCAACCATCTGGA TATGGAAGCCGTGGAGTGGCTGGAGTCCTTTCTGCTGGACTTCAAGGGCGCGCTGGTCTTTGTGGCGCACGACCGCCGCT TTATGGACACGGTGGGCACGCATGTGCTTTACCTCGGCCTTTCGCGACCCGTATTCCGCAAGGCCACCTATACCCAGTTT CTGACCCTTCAGGACGAGTATAACGCCCAGCGCGAACGCGAAGCCCGCGCCCTCAAGGACGAGCTTGACCGCAAAATGGC CTTTGTGGAGCGCTTCCGCGCCAAGGCCACCAAGGCCCGTCAGGCCGGGTCGCGCCAGAAGATGGCGAAAAAGCTGGAAA AAGAGCTGGAAGACTACCGGCCGGAACCCAAGCGCAAAGAGCTGAATTTCACCTGGCCCGAAGCACCGCATTCTGAAAAA ATCGTGCTCTCTGCCGCAGACCTGGACTTTCACTTCAACGACGGCAAAAAAATGTGGCCGCCGCTGAGTTTCACCCTGTA TCGCGGCCAGCGCATCGCCCTGGTAGGACACAACGGCTGCGGCAAGTCCACCCTGCTCAAACTGCTGGCAGGCAATCTTG AGCGCTGCGGCGGCAATATGGTCACCTCGTCCCAGGTGCGGCTGGGCTACTATACCCAGCACCAGATGGACACCCTGCGC GGCGACACCACAGTGCTTGGCGAAATCCGCCGCCTGTCCGACCCCCGCACCACAGAAGAAGAGCTTATGAGTGTGCTCGG GCTGTTCATGCTGGGGCAGGAATACTTTGACCGTCAGGTCAGCGGCCTTTCAGGCGGCGAAAAAAGCCGTCTTGTGCTGG CAAGCCTATTCCTGAAGCGCTGCAACTTTCTGCTGCTGGACGAACCCACCAACCATCTGGACCTTGAAAGCCGCGAGGCG CTCGTATCGGCCCTGCAAAAATTCACAGGCACCCTGCTTATGGTGGCCCACGACCGCTGGCTGCTCTCTCAGGTGGGCGC GGAAGCATGGGAGCTTGACAAAAGCGGCCTGACTGTGTTCTCGGATTTTACCGCATATGATGCCGAACGCCGCTCGCGCA TGGCAGGTACGGGGCAAACGGCCCCGGCCGTTTCCGGCGGCGTTGCCTCCGGCCGGAACGCTTCGGGTGATCAGGCGCAG GAGGCTTCGGCACAAAATCTTTCGCGCGAAGAGCAAAAACGCCTCAAACGCGAACAGGCCGAAAAGCGCAACGCCCTGCA CAAGGAAATCAAGCCCCTGCAAAGCAAGTATGACGCCCTGGAAAAAGAACTTACCGGGGTGCTTGAAAAACAGGGCACGG TGGAGGCCCAGCTGGCCGACCCCGAAGTCTACGCCGAGCACGAAAAGGCTGCGGAACTGCTGAAGAGTTTTGAAGCCTGC AAAAAACGCGGCGAAGACATCTTTGAGGAAATGACCGCTCTTGACGAGCGCATGGAAGCCGTGCGCGCACGGTGGAATAC AGAAGACTGA
Upstream 100 bases:
>100_bases ACGGCAGCCGCATACGGCGCGAACTTGGTTTCACGCCGTGCATGAGCCTTGAGGCGGGAATGAAAGAAGCTGTAGAAGGC TACCGCCGTGAGGGCTGGTT
Downstream 100 bases:
>100_bases TCCAGGCTGAATACGGCGCATGGCCCGCCTGCGGTTCCGTCCACAGGCTCGGGGCCGCATGGCCGGGGTGCAGCAACGTG CCTGCCGCTTGCAGATCCTG
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 669; Mature: 669
Protein sequence:
>669_residues MKITIQELSKSFGGRDIFSNFSLEVDSGVRLCVCGPNGTGKSTLLRLLAGVDAPDGGRVILPRGCRMGYVEQELSEEALD TPLLTYVLDVLHDWSDFWAQWEDAAASKDEALLTELMHRQSELEARYGYNPEHRAKAVLSGLGFAERKWHRTLRELSGGW RERAKLARVLTAGADVLLLDEPTNHLDMEAVEWLESFLLDFKGALVFVAHDRRFMDTVGTHVLYLGLSRPVFRKATYTQF LTLQDEYNAQREREARALKDELDRKMAFVERFRAKATKARQAGSRQKMAKKLEKELEDYRPEPKRKELNFTWPEAPHSEK IVLSAADLDFHFNDGKKMWPPLSFTLYRGQRIALVGHNGCGKSTLLKLLAGNLERCGGNMVTSSQVRLGYYTQHQMDTLR GDTTVLGEIRRLSDPRTTEEELMSVLGLFMLGQEYFDRQVSGLSGGEKSRLVLASLFLKRCNFLLLDEPTNHLDLESREA LVSALQKFTGTLLMVAHDRWLLSQVGAEAWELDKSGLTVFSDFTAYDAERRSRMAGTGQTAPAVSGGVASGRNASGDQAQ EASAQNLSREEQKRLKREQAEKRNALHKEIKPLQSKYDALEKELTGVLEKQGTVEAQLADPEVYAEHEKAAELLKSFEAC KKRGEDIFEEMTALDERMEAVRARWNTED
Sequences:
>Translated_669_residues MKITIQELSKSFGGRDIFSNFSLEVDSGVRLCVCGPNGTGKSTLLRLLAGVDAPDGGRVILPRGCRMGYVEQELSEEALD TPLLTYVLDVLHDWSDFWAQWEDAAASKDEALLTELMHRQSELEARYGYNPEHRAKAVLSGLGFAERKWHRTLRELSGGW RERAKLARVLTAGADVLLLDEPTNHLDMEAVEWLESFLLDFKGALVFVAHDRRFMDTVGTHVLYLGLSRPVFRKATYTQF LTLQDEYNAQREREARALKDELDRKMAFVERFRAKATKARQAGSRQKMAKKLEKELEDYRPEPKRKELNFTWPEAPHSEK IVLSAADLDFHFNDGKKMWPPLSFTLYRGQRIALVGHNGCGKSTLLKLLAGNLERCGGNMVTSSQVRLGYYTQHQMDTLR GDTTVLGEIRRLSDPRTTEEELMSVLGLFMLGQEYFDRQVSGLSGGEKSRLVLASLFLKRCNFLLLDEPTNHLDLESREA LVSALQKFTGTLLMVAHDRWLLSQVGAEAWELDKSGLTVFSDFTAYDAERRSRMAGTGQTAPAVSGGVASGRNASGDQAQ EASAQNLSREEQKRLKREQAEKRNALHKEIKPLQSKYDALEKELTGVLEKQGTVEAQLADPEVYAEHEKAAELLKSFEAC KKRGEDIFEEMTALDERMEAVRARWNTED >Mature_669_residues MKITIQELSKSFGGRDIFSNFSLEVDSGVRLCVCGPNGTGKSTLLRLLAGVDAPDGGRVILPRGCRMGYVEQELSEEALD TPLLTYVLDVLHDWSDFWAQWEDAAASKDEALLTELMHRQSELEARYGYNPEHRAKAVLSGLGFAERKWHRTLRELSGGW RERAKLARVLTAGADVLLLDEPTNHLDMEAVEWLESFLLDFKGALVFVAHDRRFMDTVGTHVLYLGLSRPVFRKATYTQF LTLQDEYNAQREREARALKDELDRKMAFVERFRAKATKARQAGSRQKMAKKLEKELEDYRPEPKRKELNFTWPEAPHSEK IVLSAADLDFHFNDGKKMWPPLSFTLYRGQRIALVGHNGCGKSTLLKLLAGNLERCGGNMVTSSQVRLGYYTQHQMDTLR GDTTVLGEIRRLSDPRTTEEELMSVLGLFMLGQEYFDRQVSGLSGGEKSRLVLASLFLKRCNFLLLDEPTNHLDLESREA LVSALQKFTGTLLMVAHDRWLLSQVGAEAWELDKSGLTVFSDFTAYDAERRSRMAGTGQTAPAVSGGVASGRNASGDQAQ EASAQNLSREEQKRLKREQAEKRNALHKEIKPLQSKYDALEKELTGVLEKQGTVEAQLADPEVYAEHEKAAELLKSFEAC KKRGEDIFEEMTALDERMEAVRARWNTED
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=538, Percent_Identity=33.8289962825279, Blast_Score=270, Evalue=4e-72, Organism=Homo sapiens, GI27881506, Length=543, Percent_Identity=32.4125230202578, Blast_Score=240, Evalue=3e-63, Organism=Homo sapiens, GI10947137, Length=543, Percent_Identity=32.4125230202578, Blast_Score=240, Evalue=3e-63, Organism=Homo sapiens, GI69354671, Length=545, Percent_Identity=30.4587155963303, Blast_Score=216, Evalue=8e-56, Organism=Homo sapiens, GI10947135, Length=545, Percent_Identity=30.4587155963303, Blast_Score=216, Evalue=8e-56, Organism=Homo sapiens, GI4506341, Length=351, Percent_Identity=25.0712250712251, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI1789751, Length=630, Percent_Identity=33.4920634920635, Blast_Score=312, Evalue=4e-86, Organism=Escherichia coli, GI1787041, Length=526, Percent_Identity=31.7490494296578, Blast_Score=253, Evalue=2e-68, Organism=Escherichia coli, GI1787182, Length=647, Percent_Identity=29.3663060278207, Blast_Score=251, Evalue=2e-67, Organism=Escherichia coli, GI2367384, Length=540, Percent_Identity=31.8518518518519, Blast_Score=238, Evalue=1e-63, Organism=Escherichia coli, GI87081834, Length=200, Percent_Identity=31.5, Blast_Score=77, Evalue=4e-15, Organism=Escherichia coli, GI87081791, Length=182, Percent_Identity=35.1648351648352, Blast_Score=76, Evalue=8e-15, Organism=Escherichia coli, GI1788165, Length=213, Percent_Identity=28.169014084507, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1787758, Length=173, Percent_Identity=28.3236994219653, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1787500, Length=223, Percent_Identity=24.2152466367713, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1787547, Length=162, Percent_Identity=28.3950617283951, Blast_Score=65, Evalue=2e-11, Organism=Escherichia coli, GI1788644, Length=235, Percent_Identity=28.936170212766, Blast_Score=64, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17553372, Length=531, Percent_Identity=34.2749529190207, Blast_Score=255, Evalue=4e-68, Organism=Caenorhabditis elegans, GI17555318, Length=517, Percent_Identity=32.8820116054159, Blast_Score=242, Evalue=4e-64, Organism=Caenorhabditis elegans, GI17559834, Length=558, Percent_Identity=30.6451612903226, Blast_Score=232, Evalue=4e-61, Organism=Caenorhabditis elegans, GI71992285, Length=235, Percent_Identity=29.7872340425532, Blast_Score=75, Evalue=8e-14, Organism=Caenorhabditis elegans, GI17542146, Length=180, Percent_Identity=28.8888888888889, Blast_Score=67, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569143, Length=220, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=547, Percent_Identity=32.9067641681901, Blast_Score=253, Evalue=7e-68, Organism=Saccharomyces cerevisiae, GI6320874, Length=524, Percent_Identity=31.1068702290076, Blast_Score=227, Evalue=4e-60, Organism=Saccharomyces cerevisiae, GI6325030, Length=400, Percent_Identity=28.25, Blast_Score=132, Evalue=1e-31, Organism=Saccharomyces cerevisiae, GI6323278, Length=392, Percent_Identity=27.2959183673469, Blast_Score=128, Evalue=3e-30, Organism=Saccharomyces cerevisiae, GI6324314, Length=391, Percent_Identity=26.3427109974425, Blast_Score=122, Evalue=2e-28, Organism=Drosophila melanogaster, GI24666836, Length=517, Percent_Identity=33.8491295938104, Blast_Score=279, Evalue=4e-75, Organism=Drosophila melanogaster, GI24641342, Length=568, Percent_Identity=30.6338028169014, Blast_Score=246, Evalue=5e-65, Organism=Drosophila melanogaster, GI24642252, Length=519, Percent_Identity=31.7919075144509, Blast_Score=244, Evalue=2e-64, Organism=Drosophila melanogaster, GI18859989, Length=519, Percent_Identity=31.7919075144509, Blast_Score=244, Evalue=2e-64, Organism=Drosophila melanogaster, GI24643394, Length=183, Percent_Identity=29.5081967213115, Blast_Score=68, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 75551; Mature: 75551
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKITIQELSKSFGGRDIFSNFSLEVDSGVRLCVCGPNGTGKSTLLRLLAGVDAPDGGRVI CEEEHHHHHHHCCCCHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE LPRGCRMGYVEQELSEEALDTPLLTYVLDVLHDWSDFWAQWEDAAASKDEALLTELMHRQ ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SELEARYGYNPEHRAKAVLSGLGFAERKWHRTLRELSGGWRERAKLARVLTAGADVLLLD HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEC EPTNHLDMEAVEWLESFLLDFKGALVFVAHDRRFMDTVGTHVLYLGLSRPVFRKATYTQF CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHEEECCCCHHHHHHHHHHH LTLQDEYNAQREREARALKDELDRKMAFVERFRAKATKARQAGSRQKMAKKLEKELEDYR EEECHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC PEPKRKELNFTWPEAPHSEKIVLSAADLDFHFNDGKKMWPPLSFTLYRGQRIALVGHNGC CCCCCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCEEEEECCCEEEEEECCCC GKSTLLKLLAGNLERCGGNMVTSSQVRLGYYTQHQMDTLRGDTTVLGEIRRLSDPRTTEE CHHHHHHHHHCCHHHCCCCCEECCCEEEEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCHH ELMSVLGLFMLGQEYFDRQVSGLSGGEKSRLVLASLFLKRCNFLLLDEPTNHLDLESREA HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHH LVSALQKFTGTLLMVAHDRWLLSQVGAEAWELDKSGLTVFSDFTAYDAERRSRMAGTGQT HHHHHHHHHCEEEEEECCHHHHHHHCCHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCC APAVSGGVASGRNASGDQAQEASAQNLSREEQKRLKREQAEKRNALHKEIKPLQSKYDAL CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKELTGVLEKQGTVEAQLADPEVYAEHEKAAELLKSFEACKKRGEDIFEEMTALDERMEA HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRARWNTED HHHHCCCCC >Mature Secondary Structure MKITIQELSKSFGGRDIFSNFSLEVDSGVRLCVCGPNGTGKSTLLRLLAGVDAPDGGRVI CEEEHHHHHHHCCCCHHHCCCCEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE LPRGCRMGYVEQELSEEALDTPLLTYVLDVLHDWSDFWAQWEDAAASKDEALLTELMHRQ ECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SELEARYGYNPEHRAKAVLSGLGFAERKWHRTLRELSGGWRERAKLARVLTAGADVLLLD HHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEC EPTNHLDMEAVEWLESFLLDFKGALVFVAHDRRFMDTVGTHVLYLGLSRPVFRKATYTQF CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHEEECCCCHHHHHHHHHHH LTLQDEYNAQREREARALKDELDRKMAFVERFRAKATKARQAGSRQKMAKKLEKELEDYR EEECHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC PEPKRKELNFTWPEAPHSEKIVLSAADLDFHFNDGKKMWPPLSFTLYRGQRIALVGHNGC CCCCCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCCCCCCCEEEEECCCEEEEEECCCC GKSTLLKLLAGNLERCGGNMVTSSQVRLGYYTQHQMDTLRGDTTVLGEIRRLSDPRTTEE CHHHHHHHHHCCHHHCCCCCEECCCEEEEEEHHHHHHHHCCCHHHHHHHHHCCCCCCCHH ELMSVLGLFMLGQEYFDRQVSGLSGGEKSRLVLASLFLKRCNFLLLDEPTNHLDLESREA HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHH LVSALQKFTGTLLMVAHDRWLLSQVGAEAWELDKSGLTVFSDFTAYDAERRSRMAGTGQT HHHHHHHHHCEEEEEECCHHHHHHHCCHHHHCCCCCCEEEEHHHHHHHHHHHHHCCCCCC APAVSGGVASGRNASGDQAQEASAQNLSREEQKRLKREQAEKRNALHKEIKPLQSKYDAL CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EKELTGVLEKQGTVEAQLADPEVYAEHEKAAELLKSFEACKKRGEDIFEEMTALDERMEA HHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRARWNTED HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]