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The map label for this gene is lafU [H]

Identifier: 220905442

GI number: 220905442

Start: 2631703

End: 2632410

Strand: Direct

Name: lafU [H]

Synonym: Ddes_2180

Alternate gene names: 220905442

Gene position: 2631703-2632410 (Clockwise)

Preceding gene: 220905441

Following gene: 220905443

Centisome position: 91.59

GC content: 58.76

Gene sequence:

>708_bases
ATGGGCGGCGCATGGAAAGTCGCTTACGCCGACTTTGTTACGGCCATGATGGCCTTCTTTCTTCTGCTCTGGGTTCTCAG
CATGGTTCCACCCGAAACACGGGCGGGCCTTGCCGCCTATTTCAGCGGTGACCGCAACTTTGACTCCAGCTCCACATCCC
CCGTCTCCAACAATCCCTTTATCCAGAATACAGACAAGATTGACACGCGCGACATCAAGATCAGCGAAGTGGAAAAATCC
CACTATGCCATTGCCCAGAAGATCAAGCAGCTGCTCATGGCCGATTCCGTTCCGCAGAGTGCTTCGGGCATCAGCGCTGA
TGACGTGGGTGTACAACTGCGGGTCAACTCCGACATCATGTTCAAGCCCGGCACTGTTGAACTGCTGCCCGAGGGCGACA
AGGTGCTTTCGTCCGTGCTCAGCCTGATGGAAGAATATAATCTGTACCTGGTGGTCCGCGGCCATGCGGATTCCGTCGAA
GCGGCTCCGCCCTACGCCTCTGCCTGGGAACTGTCGGGAGCGCGCGCCGCCGCCATGGTCAACTATCTGGCGCAGCGCGG
CATCAAGGCCACCCGGATGCGCGCTGTCAGCTACGGCGATACCCGCCCGCTCAAGCCGGGCATTGACGAGCAAAGCCGCG
CCATGAACCGGCGTGTAGAGTTTTTCTTCCATCGGCCCGAGGTCATGTCGTACAGCGTGGTTTACTAG

Upstream 100 bases:

>100_bases
CCCGAACCGGCAACGCCGCGCCTGCCGCAGGGCAGAACGCACAACGCGGCCGATCCGGCAGCCCGCACCGGGCACGGTAT
AAACCTGAGGAGTCTGCTTT

Downstream 100 bases:

>100_bases
GGGCGGATTACCAGACACGGCCTGCAACGGGCGCTCCCGCAGCAAAAACGGGGCAGCCCTGGTCAAGAGACCTGATGCTG
CAGCATCCGTTGCCGGGCAG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 234

Protein sequence:

>235_residues
MGGAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFSGDRNFDSSSTSPVSNNPFIQNTDKIDTRDIKISEVEKS
HYAIAQKIKQLLMADSVPQSASGISADDVGVQLRVNSDIMFKPGTVELLPEGDKVLSSVLSLMEEYNLYLVVRGHADSVE
AAPPYASAWELSGARAAAMVNYLAQRGIKATRMRAVSYGDTRPLKPGIDEQSRAMNRRVEFFFHRPEVMSYSVVY

Sequences:

>Translated_235_residues
MGGAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFSGDRNFDSSSTSPVSNNPFIQNTDKIDTRDIKISEVEKS
HYAIAQKIKQLLMADSVPQSASGISADDVGVQLRVNSDIMFKPGTVELLPEGDKVLSSVLSLMEEYNLYLVVRGHADSVE
AAPPYASAWELSGARAAAMVNYLAQRGIKATRMRAVSYGDTRPLKPGIDEQSRAMNRRVEFFFHRPEVMSYSVVY
>Mature_234_residues
GGAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFSGDRNFDSSSTSPVSNNPFIQNTDKIDTRDIKISEVEKSH
YAIAQKIKQLLMADSVPQSASGISADDVGVQLRVNSDIMFKPGTVELLPEGDKVLSSVLSLMEEYNLYLVVRGHADSVEA
APPYASAWELSGARAAAMVNYLAQRGIKATRMRAVSYGDTRPLKPGIDEQSRAMNRRVEFFFHRPEVMSYSVVY

Specific function: Probable integral membrane protein required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=248, Percent_Identity=28.2258064516129, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25977; Mature: 25846

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFSGDRNFDSSSTSPVSNNPF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCC
IQNTDKIDTRDIKISEVEKSHYAIAQKIKQLLMADSVPQSASGISADDVGVQLRVNSDIM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEE
FKPGTVELLPEGDKVLSSVLSLMEEYNLYLVVRGHADSVEAAPPYASAWELSGARAAAMV
ECCCCEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHH
NYLAQRGIKATRMRAVSYGDTRPLKPGIDEQSRAMNRRVEFFFHRPEVMSYSVVY
HHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEECC
>Mature Secondary Structure 
GGAWKVAYADFVTAMMAFFLLLWVLSMVPPETRAGLAAYFSGDRNFDSSSTSPVSNNPF
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCC
IQNTDKIDTRDIKISEVEKSHYAIAQKIKQLLMADSVPQSASGISADDVGVQLRVNSDIM
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEE
FKPGTVELLPEGDKVLSSVLSLMEEYNLYLVVRGHADSVEAAPPYASAWELSGARAAAMV
ECCCCEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHHHHH
NYLAQRGIKATRMRAVSYGDTRPLKPGIDEQSRAMNRRVEFFFHRPEVMSYSVVY
HHHHHCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739; 8501040 [H]