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The map label for this gene is ygiQ [C]

Identifier: 220905383

GI number: 220905383

Start: 2555923

End: 2558163

Strand: Direct

Name: ygiQ [C]

Synonym: Ddes_2121

Alternate gene names: 220905383

Gene position: 2555923-2558163 (Clockwise)

Preceding gene: 220905382

Following gene: 220905384

Centisome position: 88.95

GC content: 64.48

Gene sequence:

>2241_bases
ATGGCAACTAAACGCTCCGGTCCGGCACTTTCCGCGCCCCGGCCTCCCGCAGGGAATGCCGGGGCCGCTTCCGTCTCCGG
CCCTGACAGCCTGCATCGGCAGCCTCTTTTTGTCCCTATGAGCGTGGAAGAAATGCACGCCCTCGGCTGGGACTGTCTGG
ATGTGCTCTTTGTCACCGGCGATGCCTATGTGGACCATTCCTCTTTTGGCAGCGTACTGCTGGCCCGCTGGCTCATCCAC
CACGGCTTTCGCGCCGGCATTGTGGCCCAGCCCCGCTGGGACAAGCCGGATGACCTGCTGGTTATGGGCAGGCCGCGCCT
GTTCGCCGGAATCAGCGCGGGCGCGCTGGACTCCCTGCTGGCTCACTACACCGCCTTTCGCAAAAAGCGGCATGACGATG
CCTATACCCCGGGCGGCAAAGCCGGAGCGCGGCCCAACCGGGCCTGTCTCGTTTATGCCAACCTGGCCCGCAGGGCTTTT
CCGGGCCTGCCGCTGGCCCTTGGCGGCATAGAGGCCAGCCTGCGCCGGGTGAGCCACTATGATTTCTGGACAGACTCCCT
GCGCAAACCCATACTTATGGATGCCAAGGCTGACCTGCTTATCTGGGGCATGGGTGAATACGCCACGCTTGAATATGCCC
GGCGGCTTCATAAAGCTGAAGATACGCGCGGCATCCCCGGCACAGCCTGGCTCGACAGGCTCGAGCAGACGCCGGAAGGC
CCCCGGCCAGCCGGCCTGCCGCCGGAGCTGGCCCAAACCCCGGCCGTGCCACTGCCGTCCCATGAAGACATCCTGGCCGA
TCCCGTACAACTGCTTGTCATGACCCAGGCCCTGGAGCGCCAGGTACACAGGCTGGACGCCTGGGCTTTTCAGCCCGTGG
GCGACCGCGCCCTTGTGCTGGCCCGCCCCGCGCCCCCCCTGACAACAGAAGAAATGGATGCACTGTACGAAATTCCCTTT
ACCCGGCGGCCCCACCCAAGTTACCGCGAACCCATACCAGCGGCAGAAATGATGCGCACCAGCATTACCAGCCACAGGGG
CTGCGGCGGTGGCTGCTCTTTCTGCTCACTGGCCCTGCACCAGGGGCGCCGCATCAGCTCGCGTTCCGAAGACTCCATTC
TGGCCGAAGCCCGCAGGCTCGGACAGGAAAACATGGAGCGCGGCAAGGGGCCGGTAGCCATATCAGACGTAGGCGGTCCC
ACAGCCAACATGTGGCAGGGCTACTGCGCCCTGGACCGCATGCATGAGCGCGGGTCCGCAAACCGCACGAATCCCGCGCC
GGCCCAACCCCGTTCACAGGCCGGGGCGGAGGAGCGCAATACAAGCCGCTGCCGCCGCACGAGCTGCTGTTATCCCACAA
TCTGCAAGTTTTTCACCACGCCGCAGGGCAAACATGTGGGTCTGCTGCGCAGTGTGGCCGCCCTGCCCGAAGTCAAACAG
GCCCGTATTGCCAGCGGTGTCCGGGCCGACCTGGCCTTGCGTGATGCCGCCGCCCTGGCTGCCTATACGGGCGAATTCAC
GGGCGGGCAGCTCAAGGTGGCCCCAGAGCATTGCGCCCCCGGCGTATTGAGCCTCATGCGCAAGCCGCCGCTGGAAGTTT
TTGAAGCCTTTCTGGCAAGCTTTATTCGCCAGAGCAAGGCGGCAGGCCGCGAACAGTATGTTGTCCCCTACCTTCTCAGC
GGTTTTCCCGGCTGCACGGATAACGATATGCGCACTCTCGCGAACTGGCTGCGTGAGCGCAACTGGAATCCCCGCCAGAC
CCAGTGCTTTATCCCCACGCCCGGAACCATAGCCACGGCCATGTTTTATTGCGGTAAAAATGAAGCCGGAGAAGACATTT
ACGTAGCCCGCACCGATGCCCAGCGCCTGCGGCAGCACGGCATCCTCATGCCTGGACGCAGCAGCGCCGAGGCCAGAAGG
CAGGACAGGCCAAACAGACCAGACAGGCAGGGCAAAAAAGCTGCTGCGGAAAAGGACGCTACAGCGGGCAAACGTACTGC
CCCGGGGCGGGAGCACGGCGAAAAGCGCCACAACGGCAACAAGACGGAACACACGGCGGGCAGCGGCCGCAGCCGGGGAA
CAAACCGGCCCGACCACCCCGCAAGGCCAGACCGTTCCAGGCGCACGGCAGAGCAACATCCGCCTCGCGAAGCAGAACGC
GCAAGAGATGGAAAAACCGGCCGGGGCAGTGACCGCGGCCCCAAAACAGCAAAATTTCCCGTCCCCGGACGCCGAGCCTG
A

Upstream 100 bases:

>100_bases
CGTCCCAACCGCGGCATGGGCGGTGGTCCCATGGGTGCGCCCGGTGATCCGATGATGCCCAACCCGGGCAACCCTGATCT
GCCGCTGGTTACGCCGCCCA

Downstream 100 bases:

>100_bases
AGCACAGGAGAACAGTCATGCCCAACATGCTTGAAGACAGGCTCACCCGGCTGGAAGAGCTGACATTTTTTCAGGAAGAA
CGCATCGAAAAACTGGACGC

Product: Radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 746; Mature: 745

Protein sequence:

>746_residues
MATKRSGPALSAPRPPAGNAGAASVSGPDSLHRQPLFVPMSVEEMHALGWDCLDVLFVTGDAYVDHSSFGSVLLARWLIH
HGFRAGIVAQPRWDKPDDLLVMGRPRLFAGISAGALDSLLAHYTAFRKKRHDDAYTPGGKAGARPNRACLVYANLARRAF
PGLPLALGGIEASLRRVSHYDFWTDSLRKPILMDAKADLLIWGMGEYATLEYARRLHKAEDTRGIPGTAWLDRLEQTPEG
PRPAGLPPELAQTPAVPLPSHEDILADPVQLLVMTQALERQVHRLDAWAFQPVGDRALVLARPAPPLTTEEMDALYEIPF
TRRPHPSYREPIPAAEMMRTSITSHRGCGGGCSFCSLALHQGRRISSRSEDSILAEARRLGQENMERGKGPVAISDVGGP
TANMWQGYCALDRMHERGSANRTNPAPAQPRSQAGAEERNTSRCRRTSCCYPTICKFFTTPQGKHVGLLRSVAALPEVKQ
ARIASGVRADLALRDAAALAAYTGEFTGGQLKVAPEHCAPGVLSLMRKPPLEVFEAFLASFIRQSKAAGREQYVVPYLLS
GFPGCTDNDMRTLANWLRERNWNPRQTQCFIPTPGTIATAMFYCGKNEAGEDIYVARTDAQRLRQHGILMPGRSSAEARR
QDRPNRPDRQGKKAAAEKDATAGKRTAPGREHGEKRHNGNKTEHTAGSGRSRGTNRPDHPARPDRSRRTAEQHPPREAER
ARDGKTGRGSDRGPKTAKFPVPGRRA

Sequences:

>Translated_746_residues
MATKRSGPALSAPRPPAGNAGAASVSGPDSLHRQPLFVPMSVEEMHALGWDCLDVLFVTGDAYVDHSSFGSVLLARWLIH
HGFRAGIVAQPRWDKPDDLLVMGRPRLFAGISAGALDSLLAHYTAFRKKRHDDAYTPGGKAGARPNRACLVYANLARRAF
PGLPLALGGIEASLRRVSHYDFWTDSLRKPILMDAKADLLIWGMGEYATLEYARRLHKAEDTRGIPGTAWLDRLEQTPEG
PRPAGLPPELAQTPAVPLPSHEDILADPVQLLVMTQALERQVHRLDAWAFQPVGDRALVLARPAPPLTTEEMDALYEIPF
TRRPHPSYREPIPAAEMMRTSITSHRGCGGGCSFCSLALHQGRRISSRSEDSILAEARRLGQENMERGKGPVAISDVGGP
TANMWQGYCALDRMHERGSANRTNPAPAQPRSQAGAEERNTSRCRRTSCCYPTICKFFTTPQGKHVGLLRSVAALPEVKQ
ARIASGVRADLALRDAAALAAYTGEFTGGQLKVAPEHCAPGVLSLMRKPPLEVFEAFLASFIRQSKAAGREQYVVPYLLS
GFPGCTDNDMRTLANWLRERNWNPRQTQCFIPTPGTIATAMFYCGKNEAGEDIYVARTDAQRLRQHGILMPGRSSAEARR
QDRPNRPDRQGKKAAAEKDATAGKRTAPGREHGEKRHNGNKTEHTAGSGRSRGTNRPDHPARPDRSRRTAEQHPPREAER
ARDGKTGRGSDRGPKTAKFPVPGRRA
>Mature_745_residues
ATKRSGPALSAPRPPAGNAGAASVSGPDSLHRQPLFVPMSVEEMHALGWDCLDVLFVTGDAYVDHSSFGSVLLARWLIHH
GFRAGIVAQPRWDKPDDLLVMGRPRLFAGISAGALDSLLAHYTAFRKKRHDDAYTPGGKAGARPNRACLVYANLARRAFP
GLPLALGGIEASLRRVSHYDFWTDSLRKPILMDAKADLLIWGMGEYATLEYARRLHKAEDTRGIPGTAWLDRLEQTPEGP
RPAGLPPELAQTPAVPLPSHEDILADPVQLLVMTQALERQVHRLDAWAFQPVGDRALVLARPAPPLTTEEMDALYEIPFT
RRPHPSYREPIPAAEMMRTSITSHRGCGGGCSFCSLALHQGRRISSRSEDSILAEARRLGQENMERGKGPVAISDVGGPT
ANMWQGYCALDRMHERGSANRTNPAPAQPRSQAGAEERNTSRCRRTSCCYPTICKFFTTPQGKHVGLLRSVAALPEVKQA
RIASGVRADLALRDAAALAAYTGEFTGGQLKVAPEHCAPGVLSLMRKPPLEVFEAFLASFIRQSKAAGREQYVVPYLLSG
FPGCTDNDMRTLANWLRERNWNPRQTQCFIPTPGTIATAMFYCGKNEAGEDIYVARTDAQRLRQHGILMPGRSSAEARRQ
DRPNRPDRQGKKAAAEKDATAGKRTAPGREHGEKRHNGNKTEHTAGSGRSRGTNRPDHPARPDRSRRTAEQHPPREAERA
RDGKTGRGSDRGPKTAKFPVPGRRA

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=682, Percent_Identity=39.5894428152493, Blast_Score=444, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 81763; Mature: 81632

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKRSGPALSAPRPPAGNAGAASVSGPDSLHRQPLFVPMSVEEMHALGWDCLDVLFVTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCHHHHHHCCHHHHHHHHHCC
DAYVDHSSFGSVLLARWLIHHGFRAGIVAQPRWDKPDDLLVMGRPRLFAGISAGALDSLL
CHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCHHHHHHHH
AHYTAFRKKRHDDAYTPGGKAGARPNRACLVYANLARRAFPGLPLALGGIEASLRRVSHY
HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHCCCCCEEHHHHHHHHHHHHHC
DFWTDSLRKPILMDAKADLLIWGMGEYATLEYARRLHKAEDTRGIPGTAWLDRLEQTPEG
CHHHHHHCCCEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
PRPAGLPPELAQTPAVPLPSHEDILADPVQLLVMTQALERQVHRLDAWAFQPVGDRALVL
CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
ARPAPPLTTEEMDALYEIPFTRRPHPSYREPIPAAEMMRTSITSHRGCGGGCSFCSLALH
ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
QGRRISSRSEDSILAEARRLGQENMERGKGPVAISDVGGPTANMWQGYCALDRMHERGSA
CCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC
NRTNPAPAQPRSQAGAEERNTSRCRRTSCCYPTICKFFTTPQGKHVGLLRSVAALPEVKQ
CCCCCCCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCHHHH
ARIASGVRADLALRDAAALAAYTGEFTGGQLKVAPEHCAPGVLSLMRKPPLEVFEAFLAS
HHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHCCHHHHHHHCCCCHHHHHHHHHH
FIRQSKAAGREQYVVPYLLSGFPGCTDNDMRTLANWLRERNWNPRQTQCFIPTPGTIATA
HHHHHHHCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHH
MFYCGKNEAGEDIYVARTDAQRLRQHGILMPGRSSAEARRQDRPNRPDRQGKKAAAEKDA
HHHHCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHC
TAGKRTAPGREHGEKRHNGNKTEHTAGSGRSRGTNRPDHPARPDRSRRTAEQHPPREAER
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCHHHHH
ARDGKTGRGSDRGPKTAKFPVPGRRA
HCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ATKRSGPALSAPRPPAGNAGAASVSGPDSLHRQPLFVPMSVEEMHALGWDCLDVLFVTG
CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEEECCCHHHHHHCCHHHHHHHHHCC
DAYVDHSSFGSVLLARWLIHHGFRAGIVAQPRWDKPDDLLVMGRPRLFAGISAGALDSLL
CHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCHHHHHHHH
AHYTAFRKKRHDDAYTPGGKAGARPNRACLVYANLARRAFPGLPLALGGIEASLRRVSHY
HHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEHHHHHHCCCCCEEHHHHHHHHHHHHHC
DFWTDSLRKPILMDAKADLLIWGMGEYATLEYARRLHKAEDTRGIPGTAWLDRLEQTPEG
CHHHHHHCCCEEECCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
PRPAGLPPELAQTPAVPLPSHEDILADPVQLLVMTQALERQVHRLDAWAFQPVGDRALVL
CCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
ARPAPPLTTEEMDALYEIPFTRRPHPSYREPIPAAEMMRTSITSHRGCGGGCSFCSLALH
ECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
QGRRISSRSEDSILAEARRLGQENMERGKGPVAISDVGGPTANMWQGYCALDRMHERGSA
CCCCCCCCCHHHHHHHHHHHCHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCC
NRTNPAPAQPRSQAGAEERNTSRCRRTSCCYPTICKFFTTPQGKHVGLLRSVAALPEVKQ
CCCCCCCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCHHHH
ARIASGVRADLALRDAAALAAYTGEFTGGQLKVAPEHCAPGVLSLMRKPPLEVFEAFLAS
HHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEECHHHCCHHHHHHHCCCCHHHHHHHHHH
FIRQSKAAGREQYVVPYLLSGFPGCTDNDMRTLANWLRERNWNPRQTQCFIPTPGTIATA
HHHHHHHCCCCCEEHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHH
MFYCGKNEAGEDIYVARTDAQRLRQHGILMPGRSSAEARRQDRPNRPDRQGKKAAAEKDA
HHHHCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHC
TAGKRTAPGREHGEKRHNGNKTEHTAGSGRSRGTNRPDHPARPDRSRRTAEQHPPREAER
CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHCCCHHHHH
ARDGKTGRGSDRGPKTAKFPVPGRRA
HCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA