| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is mnmG [H]
Identifier: 220905196
GI number: 220905196
Start: 2328474
End: 2330456
Strand: Direct
Name: mnmG [H]
Synonym: Ddes_1934
Alternate gene names: 220905196
Gene position: 2328474-2330456 (Clockwise)
Preceding gene: 220905195
Following gene: 220905197
Centisome position: 81.03
GC content: 62.88
Gene sequence:
>1983_bases ATGTCTGATTCATACAACGCAAGCACATTTGACTGCATCGTGGCCGGAGGCGGCCATGCCGGCTGCGAAGCCGCCGTGGC CCTTGCCCGCATGGGACACAGCGTGCTGCTCATCAGCGGCAACCTTGACCGCCTGGGCTACCTTTCCTGCAATCCCGCCA TCGGCGGCCTTGCCAAGGGGCACATGGCGCGCGAAATCGACGCCCTGGGCGGCATGATGGGCCTGTGGGCCGATGCCGCG GGCATACAGTTTCGCATGCTGAACATGAGCAAAGGACCGGCCGTGCGGGCTACCCGCGCGCAGATGGACCGCCTTGTCTA TCAGCGAGTGGTGCAGCAGACGCTCTATTCCACGCCCGGGCTGCGCATCTGGCAGGATTCTGTCATCGAGATCACCGCGG GCGACAGCCGCGCCACAGGTGTGCGCACGGCACAGGGGCTTGAGTTTTCCGCCCGCCATGTGCTGCTGACCACGGGAACA TTCCTTGACGGCCGCATCCATATGGGGCTGACCAGCATCCCCGGCGGCCGCCTTGGCGATGCGCCCGCACTGGGTCTTTC CGACAGTCTGCGCACTCTGGGCTTTGAACTGGGCCGCCTCAAAACAGGCACTACCCCGCGGCTGTTGAAATCATCCATCA ATTATGCCGTGCTGGAAGAGCAAAAAGGTGATGATCCGGCACCGGCATTCAGTTTTCACGGCCCAGGCCCGGTCTTGCCT CAGGTTCCCTGCCATGTGACCTGGACCAATGAGCAGGCCCACGAGATCATCCGCAGCGGCTTTGACCGCTCGCCCATGTT CACGGGCGTTATCAAGGGAACGGGCGCGCGTTACTGCCCCTCCATTGAAGACAAGATCGCCCGCTTTCCCGACAGGGAAC GGCATCAGATATTCCTTGAACCTGAAGGCCTGGACAGCGCCGAAGTTTATGCCAACGGCATCTCCACCAGCCTGCCGCTG GATGTGCAGATCGGCATGATCCACGCTGTTCCCGGCCTGGAAAACGCCGTCATGCTGCGCCCGGGCTACGCCATCGAATA CGATTTTTCCGATCCCGTGCAGCTTATGCCCACCCTTGAAAGCAAGGCCGTTCCCGGCCTGTGGCTGGCGGGGCAGATCA ACGGCACTTCCGGCTACGAAGAGGCTGCGGCCCAGGGCCTGTGGGCGGCGCTGAACATTTCGTGCAGGCTGCGTGAAATG CCGCCCTTTCTGCTGGGACGCGACGAGGCCTACATGGCTGTTCTGGTGGACGATCTGGTAACTTCTGGCACTCAGGAGCC TTACCGCATGTTTACCTCGCGCGCCGAACACCGCCTGCTGCTGCGCGAAGACAATGCCGATACACGCCTGACGCCCCACG GGCGGCAGCTGGGCCTGGTAAACGATGCCCATTGGGATGCATTCTGCCGCAAGCAGGATGCCGCAAACCGCCTGCGTTCG GGCCTCGAGCAAAAACGCATCCCTGCCCCAGGGCGCGGCTCTCTCGCGGATGGACCTGCAACGGACTCTGGGCAAGATAA AGGCACCGTAACAACGGGCATGTCCGCGACAGGCAAGACCGCCGACCTGCCCGTTGGGCGCACCCTGGCCGAGGCCCTGC GCAGGCCCGAACTGGACCTGCACGGCCTTGCGGCACTTCTGCGCTCCTGTGCCTGTGAAGACACGGCCGCCGCCGCGGAA TTTCTTGAGCATGAGATGGCGCTGGCCGGAGCTGGCGTGTGTGAAAGCGTGCAGACAGAGATCAAGTATGCGGGATATCT GAGCCGTCAACGCGAACTGGTTGCGCGCGCGGCAAAGCTTGAGTCCACAGCCTTGCCCCCGGATTTGGATTATGCCACAG TAGCAGGGTTGTCCCGTGAGGTGACGGAAAAGCTCGACCGTGTCAGACCCCTGAGCCTTGGCCAGGCCGGGCGCATTTCA GGGGTCACCCCGGCGGCAGTGGGCTGCCTGGAAATACACTTGCACAAACTGGGCCTGCTCTGA
Upstream 100 bases:
>100_bases TGTGTTGAAAACACCTGCCATCAGCCCAACGAGCGCTCCTCCATCACCGCAGCCATTAAAGATGCCCAGGTGTTCACCCA CATACTCATGAATTCCGCCC
Downstream 100 bases:
>100_bases TGTCGGCAAGGCGGCACAGCAGGCACACGGCAGGCCCCGGGCCAAAAATTATTCTTCCTCCGGCCGGACCGGAAGGGCCG CAAGGCTCCTCACGGCACAG
Product: tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
Products: NA
Alternate protein names: Glucose-inhibited division protein A [H]
Number of amino acids: Translated: 660; Mature: 659
Protein sequence:
>660_residues MSDSYNASTFDCIVAGGGHAGCEAAVALARMGHSVLLISGNLDRLGYLSCNPAIGGLAKGHMAREIDALGGMMGLWADAA GIQFRMLNMSKGPAVRATRAQMDRLVYQRVVQQTLYSTPGLRIWQDSVIEITAGDSRATGVRTAQGLEFSARHVLLTTGT FLDGRIHMGLTSIPGGRLGDAPALGLSDSLRTLGFELGRLKTGTTPRLLKSSINYAVLEEQKGDDPAPAFSFHGPGPVLP QVPCHVTWTNEQAHEIIRSGFDRSPMFTGVIKGTGARYCPSIEDKIARFPDRERHQIFLEPEGLDSAEVYANGISTSLPL DVQIGMIHAVPGLENAVMLRPGYAIEYDFSDPVQLMPTLESKAVPGLWLAGQINGTSGYEEAAAQGLWAALNISCRLREM PPFLLGRDEAYMAVLVDDLVTSGTQEPYRMFTSRAEHRLLLREDNADTRLTPHGRQLGLVNDAHWDAFCRKQDAANRLRS GLEQKRIPAPGRGSLADGPATDSGQDKGTVTTGMSATGKTADLPVGRTLAEALRRPELDLHGLAALLRSCACEDTAAAAE FLEHEMALAGAGVCESVQTEIKYAGYLSRQRELVARAAKLESTALPPDLDYATVAGLSREVTEKLDRVRPLSLGQAGRIS GVTPAAVGCLEIHLHKLGLL
Sequences:
>Translated_660_residues MSDSYNASTFDCIVAGGGHAGCEAAVALARMGHSVLLISGNLDRLGYLSCNPAIGGLAKGHMAREIDALGGMMGLWADAA GIQFRMLNMSKGPAVRATRAQMDRLVYQRVVQQTLYSTPGLRIWQDSVIEITAGDSRATGVRTAQGLEFSARHVLLTTGT FLDGRIHMGLTSIPGGRLGDAPALGLSDSLRTLGFELGRLKTGTTPRLLKSSINYAVLEEQKGDDPAPAFSFHGPGPVLP QVPCHVTWTNEQAHEIIRSGFDRSPMFTGVIKGTGARYCPSIEDKIARFPDRERHQIFLEPEGLDSAEVYANGISTSLPL DVQIGMIHAVPGLENAVMLRPGYAIEYDFSDPVQLMPTLESKAVPGLWLAGQINGTSGYEEAAAQGLWAALNISCRLREM PPFLLGRDEAYMAVLVDDLVTSGTQEPYRMFTSRAEHRLLLREDNADTRLTPHGRQLGLVNDAHWDAFCRKQDAANRLRS GLEQKRIPAPGRGSLADGPATDSGQDKGTVTTGMSATGKTADLPVGRTLAEALRRPELDLHGLAALLRSCACEDTAAAAE FLEHEMALAGAGVCESVQTEIKYAGYLSRQRELVARAAKLESTALPPDLDYATVAGLSREVTEKLDRVRPLSLGQAGRIS GVTPAAVGCLEIHLHKLGLL >Mature_659_residues SDSYNASTFDCIVAGGGHAGCEAAVALARMGHSVLLISGNLDRLGYLSCNPAIGGLAKGHMAREIDALGGMMGLWADAAG IQFRMLNMSKGPAVRATRAQMDRLVYQRVVQQTLYSTPGLRIWQDSVIEITAGDSRATGVRTAQGLEFSARHVLLTTGTF LDGRIHMGLTSIPGGRLGDAPALGLSDSLRTLGFELGRLKTGTTPRLLKSSINYAVLEEQKGDDPAPAFSFHGPGPVLPQ VPCHVTWTNEQAHEIIRSGFDRSPMFTGVIKGTGARYCPSIEDKIARFPDRERHQIFLEPEGLDSAEVYANGISTSLPLD VQIGMIHAVPGLENAVMLRPGYAIEYDFSDPVQLMPTLESKAVPGLWLAGQINGTSGYEEAAAQGLWAALNISCRLREMP PFLLGRDEAYMAVLVDDLVTSGTQEPYRMFTSRAEHRLLLREDNADTRLTPHGRQLGLVNDAHWDAFCRKQDAANRLRSG LEQKRIPAPGRGSLADGPATDSGQDKGTVTTGMSATGKTADLPVGRTLAEALRRPELDLHGLAALLRSCACEDTAAAAEF LEHEMALAGAGVCESVQTEIKYAGYLSRQRELVARAAKLESTALPPDLDYATVAGLSREVTEKLDRVRPLSLGQAGRISG VTPAAVGCLEIHLHKLGLL
Specific function: NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34 [H]
COG id: COG0445
COG function: function code D; NAD/FAD-utilizing enzyme apparently involved in cell division
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the MnmG family [H]
Homologues:
Organism=Homo sapiens, GI74024895, Length=659, Percent_Identity=41.7298937784522, Blast_Score=457, Evalue=1e-128, Organism=Homo sapiens, GI19882217, Length=684, Percent_Identity=40.2046783625731, Blast_Score=442, Evalue=1e-124, Organism=Homo sapiens, GI183227703, Length=699, Percent_Identity=39.3419170243205, Blast_Score=438, Evalue=1e-123, Organism=Escherichia coli, GI2367273, Length=654, Percent_Identity=51.3761467889908, Blast_Score=639, Evalue=0.0, Organism=Caenorhabditis elegans, GI17534255, Length=647, Percent_Identity=38.1761978361669, Blast_Score=437, Evalue=1e-123, Organism=Saccharomyces cerevisiae, GI6321202, Length=649, Percent_Identity=41.6024653312789, Blast_Score=469, Evalue=1e-133, Organism=Drosophila melanogaster, GI24658174, Length=661, Percent_Identity=41.4523449319213, Blast_Score=460, Evalue=1e-129,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004416 - InterPro: IPR002218 - InterPro: IPR020595 [H]
Pfam domain/function: PF01134 GIDA [H]
EC number: NA
Molecular weight: Translated: 70795; Mature: 70663
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS01280 GIDA_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSYNASTFDCIVAGGGHAGCEAAVALARMGHSVLLISGNLDRLGYLSCNPAIGGLAKG CCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCHHHH HMAREIDALGGMMGLWADAAGIQFRMLNMSKGPAVRATRAQMDRLVYQRVVQQTLYSTPG HHHHHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC LRIWQDSVIEITAGDSRATGVRTAQGLEFSARHVLLTTGTFLDGRIHMGLTSIPGGRLGD CEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEECCEEEECEECCCCCCCCC APALGLSDSLRTLGFELGRLKTGTTPRLLKSSINYAVLEEQKGDDPAPAFSFHGPGPVLP CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC QVPCHVTWTNEQAHEIIRSGFDRSPMFTGVIKGTGARYCPSIEDKIARFPDRERHQIFLE CCCEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEEC PEGLDSAEVYANGISTSLPLDVQIGMIHAVPGLENAVMLRPGYAIEYDFSDPVQLMPTLE CCCCCHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEECCCEEEEECCCCCHHHHCCHH SKAVPGLWLAGQINGTSGYEEAAAQGLWAALNISCRLREMPPFLLGRDEAYMAVLVDDLV HCCCCCEEEEEEECCCCCHHHHHHCCCEEEEEEEEEEECCCCHHCCCCCHHHHHHHHHHH TSGTQEPYRMFTSRAEHRLLLREDNADTRLTPHGRQLGLVNDAHWDAFCRKQDAANRLRS HCCCCHHHHHHHHHHHCEEEEEECCCCCEECCCCCEECCCCCCHHHHHHHHHHHHHHHHH GLEQKRIPAPGRGSLADGPATDSGQDKGTVTTGMSATGKTADLPVGRTLAEALRRPELDL HHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCH HGLAALLRSCACEDTAAAAEFLEHEMALAGAGVCESVQTEIKYAGYLSRQRELVARAAKL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESTALPPDLDYATVAGLSREVTEKLDRVRPLSLGQAGRISGVTPAAVGCLEIHLHKLGLL HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure SDSYNASTFDCIVAGGGHAGCEAAVALARMGHSVLLISGNLDRLGYLSCNPAIGGLAKG CCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEECCCCCCCHHHH HMAREIDALGGMMGLWADAAGIQFRMLNMSKGPAVRATRAQMDRLVYQRVVQQTLYSTPG HHHHHHHHHCCHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC LRIWQDSVIEITAGDSRATGVRTAQGLEFSARHVLLTTGTFLDGRIHMGLTSIPGGRLGD CEEECCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCEECCEEEECEECCCCCCCCC APALGLSDSLRTLGFELGRLKTGTTPRLLKSSINYAVLEEQKGDDPAPAFSFHGPGPVLP CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC QVPCHVTWTNEQAHEIIRSGFDRSPMFTGVIKGTGARYCPSIEDKIARFPDRERHQIFLE CCCEEEEECCHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCEEEEC PEGLDSAEVYANGISTSLPLDVQIGMIHAVPGLENAVMLRPGYAIEYDFSDPVQLMPTLE CCCCCHHHHHHCCCCCCCCEEEEEEEEEECCCCCCEEEECCCEEEEECCCCCHHHHCCHH SKAVPGLWLAGQINGTSGYEEAAAQGLWAALNISCRLREMPPFLLGRDEAYMAVLVDDLV HCCCCCEEEEEEECCCCCHHHHHHCCCEEEEEEEEEEECCCCHHCCCCCHHHHHHHHHHH TSGTQEPYRMFTSRAEHRLLLREDNADTRLTPHGRQLGLVNDAHWDAFCRKQDAANRLRS HCCCCHHHHHHHHHHHCEEEEEECCCCCEECCCCCEECCCCCCHHHHHHHHHHHHHHHHH GLEQKRIPAPGRGSLADGPATDSGQDKGTVTTGMSATGKTADLPVGRTLAEALRRPELDL HHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCCCCCH HGLAALLRSCACEDTAAAAEFLEHEMALAGAGVCESVQTEIKYAGYLSRQRELVARAAKL HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESTALPPDLDYATVAGLSREVTEKLDRVRPLSLGQAGRISGVTPAAVGCLEIHLHKLGLL HHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA