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The map label for this gene is pdxS

Identifier: 220905160

GI number: 220905160

Start: 2287677

End: 2288558

Strand: Reverse

Name: pdxS

Synonym: Ddes_1898

Alternate gene names: 220905160

Gene position: 2288558-2287677 (Counterclockwise)

Preceding gene: 220905171

Following gene: 220905159

Centisome position: 79.65

GC content: 59.52

Gene sequence:

>882_bases
ATGGAACAGGGCACCATTCGCCTGAAGACAGGCCTTGCAGAAATGCTGAAAGGCGGCGTGATCATGGACGTCACCACTCC
CGAACAGGCTAAAATCGCTGAAGAAGCTGGCGCTTGCGCCGTAATGGCTCTGGAGCGTGTGCCTGCGGACATTCGCGCTG
CCGGTGGCGTGGCCCGCATGGCTGATCCCACCATTGTTAAAAAAATCATGGAAGTAGCCACCATTCCCGTTATGGCCAAG
GCGCGCATCGGCCACTTTGTGGAAGCGCGTATTCTTGAGTCTATGGGGGTGGATTATATTGACGAGAGCGAAGTGCTCAC
CCCCGCTGACGACAAGTATCATATCGACAAGCGCGATTTCACCGTGCCTTTTGTCTGCGGCTGCCGCAATCTGGGCGAAG
CCCTGCGCCGTATCGCCGAAGGCGCGGCCATGATTCGCACCAAGGGCGAGCCTGGAACCGGCAACGTGGTTGAAGCCGTG
CGCCATTGCCGTCAGGTGATGGACGAAGTGCGCATGCTCTGCGCCCTGCCCGAAGCCGAGGTGCCCAACTTTGCCAAAGA
AATGGGCGCTCCTCTTGAACTGTGCCTGCTCGTACGCAAAGAAGGCCGCCTGCCCGTGGTCAACTTTGCCGCCGGCGGCA
TCGCCACCCCGGCTGACGCCGCCATGATGATGCATCTTGGTTGCGACGGCGTATTTGTGGGTTCCGGCATTTTCAAGTCC
GGCGACCCGGCCAAGCGCGCCAGGGCCATTGTGCAGGCCGTGACCAACTACAAGGATTTCGCCCTGCTGGCCGAAATCTC
CCGTGATCTTGGCGAACCTATGGTGGGTATTGAAATTTCCACCATTCCCTCTGGTGAGCGCATGCAGGAGCGGGGCTGGT
AG

Upstream 100 bases:

>100_bases
GAACGCTTATGACATATAAAGCATCCCAGCAACGCCGCAGCGTGAGCGGTAGACTGCCAAACATCTCGCCGGCAGACCCG
GCTCAGAAGGAGTAGAAGAA

Downstream 100 bases:

>100_bases
ATGGCCCGCTGTGTGGGTGTGCTGGCCCTTCAGGGGGCTTTTCGTGAGCATGTGGCCGCCGTGTCCCGTTTGGGCGTGGC
GGCCCGCGAAGTGCGCCAGC

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MEQGTIRLKTGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMADPTIVKKIMEVATIPVMAK
ARIGHFVEARILESMGVDYIDESEVLTPADDKYHIDKRDFTVPFVCGCRNLGEALRRIAEGAAMIRTKGEPGTGNVVEAV
RHCRQVMDEVRMLCALPEAEVPNFAKEMGAPLELCLLVRKEGRLPVVNFAAGGIATPADAAMMMHLGCDGVFVGSGIFKS
GDPAKRARAIVQAVTNYKDFALLAEISRDLGEPMVGIEISTIPSGERMQERGW

Sequences:

>Translated_293_residues
MEQGTIRLKTGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMADPTIVKKIMEVATIPVMAK
ARIGHFVEARILESMGVDYIDESEVLTPADDKYHIDKRDFTVPFVCGCRNLGEALRRIAEGAAMIRTKGEPGTGNVVEAV
RHCRQVMDEVRMLCALPEAEVPNFAKEMGAPLELCLLVRKEGRLPVVNFAAGGIATPADAAMMMHLGCDGVFVGSGIFKS
GDPAKRARAIVQAVTNYKDFALLAEISRDLGEPMVGIEISTIPSGERMQERGW
>Mature_293_residues
MEQGTIRLKTGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMADPTIVKKIMEVATIPVMAK
ARIGHFVEARILESMGVDYIDESEVLTPADDKYHIDKRDFTVPFVCGCRNLGEALRRIAEGAAMIRTKGEPGTGNVVEAV
RHCRQVMDEVRMLCALPEAEVPNFAKEMGAPLELCLLVRKEGRLPVVNFAAGGIATPADAAMMMHLGCDGVFVGSGIFKS
GDPAKRARAIVQAVTNYKDFALLAEISRDLGEPMVGIEISTIPSGERMQERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=292, Percent_Identity=60.958904109589, Blast_Score=362, Evalue=1e-101,
Organism=Saccharomyces cerevisiae, GI6323996, Length=295, Percent_Identity=62.0338983050847, Blast_Score=361, Evalue=1e-100,
Organism=Saccharomyces cerevisiae, GI6321049, Length=295, Percent_Identity=61.6949152542373, Blast_Score=360, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_DESDA (B8J2D5)

Other databases:

- EMBL:   CP001358
- RefSeq:   YP_002480472.1
- GeneID:   7285613
- GenomeReviews:   CP001358_GR
- KEGG:   dds:Ddes_1898
- HOGENOM:   HBG292342
- ProtClustDB:   PRK04180
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 31510; Mature: 31510

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQGTIRLKTGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARM
CCCCCEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCHHHHHHHHCCHHHHHCCCCHHH
ADPTIVKKIMEVATIPVMAKARIGHFVEARILESMGVDYIDESEVLTPADDKYHIDKRDF
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCC
TVPFVCGCRNLGEALRRIAEGAAMIRTKGEPGTGNVVEAVRHCRQVMDEVRMLCALPEAE
CCHHHHCHHHHHHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
VPNFAKEMGAPLELCLLVRKEGRLPVVNFAAGGIATPADAAMMMHLGCDGVFVGSGIFKS
CCHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GDPAKRARAIVQAVTNYKDFALLAEISRDLGEPMVGIEISTIPSGERMQERGW
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHCCC
>Mature Secondary Structure
MEQGTIRLKTGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARM
CCCCCEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCHHHHHHHHCCHHHHHCCCCHHH
ADPTIVKKIMEVATIPVMAKARIGHFVEARILESMGVDYIDESEVLTPADDKYHIDKRDF
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCC
TVPFVCGCRNLGEALRRIAEGAAMIRTKGEPGTGNVVEAVRHCRQVMDEVRMLCALPEAE
CCHHHHCHHHHHHHHHHHHCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
VPNFAKEMGAPLELCLLVRKEGRLPVVNFAAGGIATPADAAMMMHLGCDGVFVGSGIFKS
CCHHHHHHCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEECCCCCCC
GDPAKRARAIVQAVTNYKDFALLAEISRDLGEPMVGIEISTIPSGERMQERGW
CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA