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The map label for this gene is kpsD [H]

Identifier: 220905089

GI number: 220905089

Start: 2202054

End: 2203604

Strand: Direct

Name: kpsD [H]

Synonym: Ddes_1826

Alternate gene names: 220905089

Gene position: 2202054-2203604 (Clockwise)

Preceding gene: 220905088

Following gene: 220905090

Centisome position: 76.63

GC content: 63.12

Gene sequence:

>1551_bases
ATGCTGCAACAAAAATATCTTCTTGCCGTTCTGGCGCTGCTGGCTCTTTGCGGCTCCGCCCATGCCGCCGACACTGTACA
ACCCTATGCGGCCAACCTTTTTCAGGGCAACTTTGCCCAGAACAAGGAAGGCGCGGTCATTGCGCCCGGCGACCGTGTGG
TGGTGCGCCTGTGGGGCGGCGACCTCAATGTGGACCGCACCCTCGCAGTAGGGCCGGACGGGCATATGAACCTGCCCGAA
GTGGGCGACATGCCCGTGGCCGGCCTGGCCTACGACAAGCTGGCCGATGCCCTGCGCAGCAAACTGGCCGCCAACGGGCA
TGCTGATGTGCAGATTTACGCAGCGCCACTGGACGCGCGCCCCGTATCCGTTTTTGTAACGGGCGGCGTAAGCCGTCCGG
GACGCTATACCGGCGGCCCCAGCGACCCCCTGCTCAGCTTTCTGGACAAGGCGGGCGGGCTTGACCCGGTGCGCGGCAGC
TACCGCGACATCCGCCTCATGCGTGACGGCACAACCGTCACCAGCCTCGACCTCTATCCCTTTGCCCGCAAGGGCGTGCT
GCCCGCCGTGCGCGTGCAGGAAGGCGACACCCTTGTGGTGGGCGAAAAAGGCCCCACCATCACGGCCACCGGGGCGGTCC
GCAATCCCGCGCTCTTTGAGTTTCCCAAGGGGCAGGCCACCGGAACCGCACTTATGGACCTGGCCGACCCCGAGGGGCGC
GCTTCGCACATAGCCCTGAACGGAACCCGCAACGGCGCGCCGTACAGCACCTACCTGCCCCTCAAGGATCTGCGTGCCCT
GCAGCTTGAAGACGGCGACAAGGTGCAGTTTATCGCCGATGCGCCGGGCAATACCATCATGATTGAAGTGCAGGGAGCGG
TGCGCGGGGCTTCACGCTTTCCCGTGCGTCAGGGCGCGCGCCTTCGGGACGTGAAAAACTTCATCGCCGTGGAACCGGAA
CGCGCCAACCTTGAAGCCATGTACATCAAGCGCAAAAGCGTGGCTGCCAGACAAAAAAAGGCCATTGCCGATTCCCTGCG
CCGTCTTGAAGAAACAGCCCTTACCGCCTCGTCGGCCAGTACCGAGGAAGCGCAGATACGCGCCAAGGAAGCCGAAATGG
TGTCCAAGTTCGTGGAGCGCGCCAAGGCTGTCGAACCGGAAGGAGTGGTGGTGCTGGACGGCGGCCCGGACAAGGCAGAT
CTGAGCCTTGAAGAGGGCGATGTCATCGTTATCCCCACCAAGAGCGATGTGGTACTGGTAAGCGGCGAGGTTATGGTTCC
GCAGGCCATGCTCTGGGGCAAAAAGAAGGATGCCGACGACTATATCAAGGGTGCAGGCGGCTTGACCAGCCGCGCAGACA
GCGGCAAGATTCTTGTCATGCACCAGAACGGTTCTGTAACTCAGGGCGGGGGCGACATCTCCCCCGGCGACCAGATACTG
GTGCTGCCCAAGGTGGAATCCAAAAGCATGCAGGCCGTCAAGGACATCTCGCAGGTGCTCATGCAGGTGGCGGTATCTGC
CCGGGTGCTGCTGGGGCTGCCGACCCTGTAA

Upstream 100 bases:

>100_bases
CATTTCCAAACCGTAATTGCACGGGGCCAACTTCCGAAACCATAGCAGGCGCGCGGCGCGGCACAGCCGCGAGACCGCGC
GTCGCATACTTTGAAACACC

Downstream 100 bases:

>100_bases
CAGAAATTCCCTGGGGCTGTTTTCAGATATTGCGTATTTGGAAGCAGCCCCTCATAGGCATTGTTGCCGTTTTTATGTAT
ACTGCTCTGGACGGCACTGC

Product: polysaccharide export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 516; Mature: 516

Protein sequence:

>516_residues
MLQQKYLLAVLALLALCGSAHAADTVQPYAANLFQGNFAQNKEGAVIAPGDRVVVRLWGGDLNVDRTLAVGPDGHMNLPE
VGDMPVAGLAYDKLADALRSKLAANGHADVQIYAAPLDARPVSVFVTGGVSRPGRYTGGPSDPLLSFLDKAGGLDPVRGS
YRDIRLMRDGTTVTSLDLYPFARKGVLPAVRVQEGDTLVVGEKGPTITATGAVRNPALFEFPKGQATGTALMDLADPEGR
ASHIALNGTRNGAPYSTYLPLKDLRALQLEDGDKVQFIADAPGNTIMIEVQGAVRGASRFPVRQGARLRDVKNFIAVEPE
RANLEAMYIKRKSVAARQKKAIADSLRRLEETALTASSASTEEAQIRAKEAEMVSKFVERAKAVEPEGVVVLDGGPDKAD
LSLEEGDVIVIPTKSDVVLVSGEVMVPQAMLWGKKKDADDYIKGAGGLTSRADSGKILVMHQNGSVTQGGGDISPGDQIL
VLPKVESKSMQAVKDISQVLMQVAVSARVLLGLPTL

Sequences:

>Translated_516_residues
MLQQKYLLAVLALLALCGSAHAADTVQPYAANLFQGNFAQNKEGAVIAPGDRVVVRLWGGDLNVDRTLAVGPDGHMNLPE
VGDMPVAGLAYDKLADALRSKLAANGHADVQIYAAPLDARPVSVFVTGGVSRPGRYTGGPSDPLLSFLDKAGGLDPVRGS
YRDIRLMRDGTTVTSLDLYPFARKGVLPAVRVQEGDTLVVGEKGPTITATGAVRNPALFEFPKGQATGTALMDLADPEGR
ASHIALNGTRNGAPYSTYLPLKDLRALQLEDGDKVQFIADAPGNTIMIEVQGAVRGASRFPVRQGARLRDVKNFIAVEPE
RANLEAMYIKRKSVAARQKKAIADSLRRLEETALTASSASTEEAQIRAKEAEMVSKFVERAKAVEPEGVVVLDGGPDKAD
LSLEEGDVIVIPTKSDVVLVSGEVMVPQAMLWGKKKDADDYIKGAGGLTSRADSGKILVMHQNGSVTQGGGDISPGDQIL
VLPKVESKSMQAVKDISQVLMQVAVSARVLLGLPTL
>Mature_516_residues
MLQQKYLLAVLALLALCGSAHAADTVQPYAANLFQGNFAQNKEGAVIAPGDRVVVRLWGGDLNVDRTLAVGPDGHMNLPE
VGDMPVAGLAYDKLADALRSKLAANGHADVQIYAAPLDARPVSVFVTGGVSRPGRYTGGPSDPLLSFLDKAGGLDPVRGS
YRDIRLMRDGTTVTSLDLYPFARKGVLPAVRVQEGDTLVVGEKGPTITATGAVRNPALFEFPKGQATGTALMDLADPEGR
ASHIALNGTRNGAPYSTYLPLKDLRALQLEDGDKVQFIADAPGNTIMIEVQGAVRGASRFPVRQGARLRDVKNFIAVEPE
RANLEAMYIKRKSVAARQKKAIADSLRRLEETALTASSASTEEAQIRAKEAEMVSKFVERAKAVEPEGVVVLDGGPDKAD
LSLEEGDVIVIPTKSDVVLVSGEVMVPQAMLWGKKKDADDYIKGAGGLTSRADSGKILVMHQNGSVTQGGGDISPGDQIL
VLPKVESKSMQAVKDISQVLMQVAVSARVLLGLPTL

Specific function: Involved in the translocation of the polysialic acid capsule across the outer membrane to the cell surface. May function as the periplasmic binding element of the PSA transport system, in which it transiently interacts with the membrane component of the t

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To E.coli K5 kpsD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003715 [H]

Pfam domain/function: PF02563 Poly_export [H]

EC number: NA

Molecular weight: Translated: 54644; Mature: 54644

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQQKYLLAVLALLALCGSAHAADTVQPYAANLFQGNFAQNKEGAVIAPGDRVVVRLWGG
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCEECCCCEEEEEEECC
DLNVDRTLAVGPDGHMNLPEVGDMPVAGLAYDKLADALRSKLAANGHADVQIYAAPLDAR
CCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
PVSVFVTGGVSRPGRYTGGPSDPLLSFLDKAGGLDPVRGSYRDIRLMRDGTTVTSLDLYP
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCC
FARKGVLPAVRVQEGDTLVVGEKGPTITATGAVRNPALFEFPKGQATGTALMDLADPEGR
CHHCCCCCEEEEECCCEEEECCCCCEEEEECCCCCCCEEECCCCCCCCEEEEECCCCCCC
ASHIALNGTRNGAPYSTYLPLKDLRALQLEDGDKVQFIADAPGNTIMIEVQGAVRGASRF
CEEEEEECCCCCCCEEEECCHHHCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCC
PVRQGARLRDVKNFIAVEPERANLEAMYIKRKSVAARQKKAIADSLRRLEETALTASSAS
CHHCCCHHHHHHHHHEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEEAQIRAKEAEMVSKFVERAKAVEPEGVVVLDGGPDKADLSLEEGDVIVIPTKSDVVLV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCCEEEE
SGEVMVPQAMLWGKKKDADDYIKGAGGLTSRADSGKILVMHQNGSVTQGGGDISPGDQIL
ECCEECCHHHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCEEE
VLPKVESKSMQAVKDISQVLMQVAVSARVLLGLPTL
EEECCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCC
>Mature Secondary Structure
MLQQKYLLAVLALLALCGSAHAADTVQPYAANLFQGNFAQNKEGAVIAPGDRVVVRLWGG
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCEECCCCEEEEEEECC
DLNVDRTLAVGPDGHMNLPEVGDMPVAGLAYDKLADALRSKLAANGHADVQIYAAPLDAR
CCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
PVSVFVTGGVSRPGRYTGGPSDPLLSFLDKAGGLDPVRGSYRDIRLMRDGTTVTSLDLYP
CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCC
FARKGVLPAVRVQEGDTLVVGEKGPTITATGAVRNPALFEFPKGQATGTALMDLADPEGR
CHHCCCCCEEEEECCCEEEECCCCCEEEEECCCCCCCEEECCCCCCCCEEEEECCCCCCC
ASHIALNGTRNGAPYSTYLPLKDLRALQLEDGDKVQFIADAPGNTIMIEVQGAVRGASRF
CEEEEEECCCCCCCEEEECCHHHCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCCCCC
PVRQGARLRDVKNFIAVEPERANLEAMYIKRKSVAARQKKAIADSLRRLEETALTASSAS
CHHCCCHHHHHHHHHEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
TEEAQIRAKEAEMVSKFVERAKAVEPEGVVVLDGGPDKADLSLEEGDVIVIPTKSDVVLV
CCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCEEECCCCEEEEECCCCEEEE
SGEVMVPQAMLWGKKKDADDYIKGAGGLTSRADSGKILVMHQNGSVTQGGGDISPGDQIL
ECCEECCHHHHCCCCCCHHHHHHCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCCEEE
VLPKVESKSMQAVKDISQVLMQVAVSARVLLGLPTL
EEECCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8021185 [H]