| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
Click here to switch to the map view.
The map label for this gene is fusA [H]
Identifier: 220905048
GI number: 220905048
Start: 2155325
End: 2157388
Strand: Direct
Name: fusA [H]
Synonym: Ddes_1785
Alternate gene names: 220905048
Gene position: 2155325-2157388 (Clockwise)
Preceding gene: 220905046
Following gene: 220905049
Centisome position: 75.01
GC content: 59.06
Gene sequence:
>2064_bases ATGCCTACCCCACTGGAAATGCAACGCACCTTTGCACTCGTCGGCACCGGCGGCTGCGGCAAAACCTCTCTTGCCGAGAT GCTGCTGTTCAATGCCGGAACCACCACCCGCATGGGCGCCATTGAAGAAGGCACCACAAGCCTCGACTACGAGCCGGAAG AAACCCGGCGGCGCGGCTCGGTGCAGCCCGCCTGCGCGACCTATATGTGGAACAAAAACCGGCATTTCCTGCTGGATATC CCTGGTGACGGCAACTTTACGGGCGATATGGAATGCCTGCTCAAGGGTGTGGACAGCGTGGTTTTTGTGCTGGACGCCGT GGACGGTGTGCGGCCCCTGGCAAAAAAATTCTGGAGCATGGTCCGGCAGGCCGGTCTGCCCGTCATGATCGTGATCAATA AGCTTGACCGCGACCGCGCCGACTTTCAGATGACCTTTGACGGCCTGTCCGCCCTGGGCATCCGGCCTGTGGCCCTGCAA CTGCCCATCCGCCAGGGTGAAACATTTTTGGGTGTGGCCGATGTGCTCTCCGGCAAGGCACACATGTTCAAGCCCGACGG CAGCACGGCTGAAGCCGAAATTCCTGCCGGGCTTGCCGATGATGTGAGCCTTTTACGCGATATTACCGTGGAAAATATCG CTGAAAGCGATGAAATCCTTATGGAAAAGTATCTTGAAGAAGGCAGCCTGCCACTGGAAGACCTGCACGACGGCCTGCGT GCGGGCGTTATCAAGGGAGAGCTGATTCCCGTCCTGACCTGCTCGGCCCTTGAAAACAAGGGCGGTGCGGCCTTGCTTGA TGCCATAGAAGCCCTGCTGCCCTCGCCTCTTGACCGCCCGGCCTTTGAAGGTGAAGGCGGCGCCAGCCGTACCGCTGACC CGGAAGGTCCGGTGGCCTGCTTTGTGTTCAAGACCCTGGCCGACCCCTTTGCCGGGCAGCTCTCCCTGCTGCGGATTCTT TCCGGCACCATCAGTGGCGATGTAAACCTTAAAAACATGCGCAGCGAAGACAATGAGCGGCTGGGCAGCCTGCTGTTCCT GACGGGCAAAAACCAGACCCCCTGCAAGGAACCGATAGGCCCCGGCGCCATTGTGGCTGTGGCCAAACTCAAAAACACCC GCACAGGCGACACCCTTTGCGATGAAAAGGCCCCCTTTGTGCTGCCCATGCCACACCTGCCGCCGCAACTCATTACCTAC GCCCTGGCTCCCAGGGAAAAAGGCGAAGAGGACAAGGTTTACGCGGCCATGCAGCGGCTGCTGGACGAAGATATTACCCT GAAGCTCGGCCGTGACGGAGAAAACGGCGATATCCTGCTCTCGGGCATGGGGCAGTTGCATATCGAGCTTTCTGTTGAAA AGGCCAAGCGCCGCTTCAAGGTGGATATCGTGCTCAAGACCCCCAAGGTTCCCTACCGCGAAACAGTGCGCGGCAAGTGT CAGGTCCAGGGCAGGCACAAAAAGCAGTCCGGTGGCCGGGGCCAGTTCGGCGACTGCTGGATAGAAATGGAAGGGTTGCC GCGCGGCTCCGGTTACCAGTTTGAAGATGCCATTGTGGGCGGCGTCATCCCCCGCCAGTACGTTCCCGCCATTGACAAGG GCGTGCAGGAAGCTGCGGCGCGGGGTTTTCTGGCCGGATGCCAGGTAGTGGATTTCCGCGTCAAGGTTTATGACGGCAGC TATCACACTGTGGACTCTTCAGAAATGGCCTTCAAGGTGGCAGGCTCACTGGCGTTCAAAAAGGCTATGGAGAATCTCAA GCCGGTTTTGCTGGAACCCATTGTGCTGCTGACGGTTTCTGTTCCCGATGAAAGCATGGGCGACGTTATCGGCGACCTCT CCTCCCGCAGGGGCAAGGTGCTTGGCTCCGATTCGCAGGGCGGCAGCACAGAAATCAAGGCCCATGTACCCATGAGCGAA GTGCTGCGCTACGCTCCCGACCTGCGCTCCATGACTGGAGGGCAGGGCTTTTTCACTATGGAATTTGCCCACTATGAAGA AGCCCCGCAGCCTGTAACAGAAAAAATTGTGGCTGAATACCAGGGCGCAAAGGCCGCCGAGTAA
Upstream 100 bases:
>100_bases TCCCCTGCCCCGCCTTCGCAACACCGTGCTCCTTCCCTGGTTTCGTTCACCCGGCCCGCGCCGCGCGCGCCAGCCACATC GCTTACTAAGGGAGAAAACC
Downstream 100 bases:
>100_bases TCACAGTCTTCCCTGCCGGACCGCCACGTGTATTCAGAAACCGGCGAACCGGCAGGGCTTTCGCCACAACCCTCCGGACG CGCAGGCCTTTTGTCCTGCC
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: EF-G [H]
Number of amino acids: Translated: 687; Mature: 686
Protein sequence:
>687_residues MPTPLEMQRTFALVGTGGCGKTSLAEMLLFNAGTTTRMGAIEEGTTSLDYEPEETRRRGSVQPACATYMWNKNRHFLLDI PGDGNFTGDMECLLKGVDSVVFVLDAVDGVRPLAKKFWSMVRQAGLPVMIVINKLDRDRADFQMTFDGLSALGIRPVALQ LPIRQGETFLGVADVLSGKAHMFKPDGSTAEAEIPAGLADDVSLLRDITVENIAESDEILMEKYLEEGSLPLEDLHDGLR AGVIKGELIPVLTCSALENKGGAALLDAIEALLPSPLDRPAFEGEGGASRTADPEGPVACFVFKTLADPFAGQLSLLRIL SGTISGDVNLKNMRSEDNERLGSLLFLTGKNQTPCKEPIGPGAIVAVAKLKNTRTGDTLCDEKAPFVLPMPHLPPQLITY ALAPREKGEEDKVYAAMQRLLDEDITLKLGRDGENGDILLSGMGQLHIELSVEKAKRRFKVDIVLKTPKVPYRETVRGKC QVQGRHKKQSGGRGQFGDCWIEMEGLPRGSGYQFEDAIVGGVIPRQYVPAIDKGVQEAAARGFLAGCQVVDFRVKVYDGS YHTVDSSEMAFKVAGSLAFKKAMENLKPVLLEPIVLLTVSVPDESMGDVIGDLSSRRGKVLGSDSQGGSTEIKAHVPMSE VLRYAPDLRSMTGGQGFFTMEFAHYEEAPQPVTEKIVAEYQGAKAAE
Sequences:
>Translated_687_residues MPTPLEMQRTFALVGTGGCGKTSLAEMLLFNAGTTTRMGAIEEGTTSLDYEPEETRRRGSVQPACATYMWNKNRHFLLDI PGDGNFTGDMECLLKGVDSVVFVLDAVDGVRPLAKKFWSMVRQAGLPVMIVINKLDRDRADFQMTFDGLSALGIRPVALQ LPIRQGETFLGVADVLSGKAHMFKPDGSTAEAEIPAGLADDVSLLRDITVENIAESDEILMEKYLEEGSLPLEDLHDGLR AGVIKGELIPVLTCSALENKGGAALLDAIEALLPSPLDRPAFEGEGGASRTADPEGPVACFVFKTLADPFAGQLSLLRIL SGTISGDVNLKNMRSEDNERLGSLLFLTGKNQTPCKEPIGPGAIVAVAKLKNTRTGDTLCDEKAPFVLPMPHLPPQLITY ALAPREKGEEDKVYAAMQRLLDEDITLKLGRDGENGDILLSGMGQLHIELSVEKAKRRFKVDIVLKTPKVPYRETVRGKC QVQGRHKKQSGGRGQFGDCWIEMEGLPRGSGYQFEDAIVGGVIPRQYVPAIDKGVQEAAARGFLAGCQVVDFRVKVYDGS YHTVDSSEMAFKVAGSLAFKKAMENLKPVLLEPIVLLTVSVPDESMGDVIGDLSSRRGKVLGSDSQGGSTEIKAHVPMSE VLRYAPDLRSMTGGQGFFTMEFAHYEEAPQPVTEKIVAEYQGAKAAE >Mature_686_residues PTPLEMQRTFALVGTGGCGKTSLAEMLLFNAGTTTRMGAIEEGTTSLDYEPEETRRRGSVQPACATYMWNKNRHFLLDIP GDGNFTGDMECLLKGVDSVVFVLDAVDGVRPLAKKFWSMVRQAGLPVMIVINKLDRDRADFQMTFDGLSALGIRPVALQL PIRQGETFLGVADVLSGKAHMFKPDGSTAEAEIPAGLADDVSLLRDITVENIAESDEILMEKYLEEGSLPLEDLHDGLRA GVIKGELIPVLTCSALENKGGAALLDAIEALLPSPLDRPAFEGEGGASRTADPEGPVACFVFKTLADPFAGQLSLLRILS GTISGDVNLKNMRSEDNERLGSLLFLTGKNQTPCKEPIGPGAIVAVAKLKNTRTGDTLCDEKAPFVLPMPHLPPQLITYA LAPREKGEEDKVYAAMQRLLDEDITLKLGRDGENGDILLSGMGQLHIELSVEKAKRRFKVDIVLKTPKVPYRETVRGKCQ VQGRHKKQSGGRGQFGDCWIEMEGLPRGSGYQFEDAIVGGVIPRQYVPAIDKGVQEAAARGFLAGCQVVDFRVKVYDGSY HTVDSSEMAFKVAGSLAFKKAMENLKPVLLEPIVLLTVSVPDESMGDVIGDLSSRRGKVLGSDSQGGSTEIKAHVPMSEV LRYAPDLRSMTGGQGFFTMEFAHYEEAPQPVTEKIVAEYQGAKAAE
Specific function: Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=702, Percent_Identity=31.7663817663818, Blast_Score=305, Evalue=1e-82, Organism=Homo sapiens, GI19923640, Length=707, Percent_Identity=27.015558698727, Blast_Score=236, Evalue=4e-62, Organism=Homo sapiens, GI25306287, Length=684, Percent_Identity=26.1695906432749, Blast_Score=206, Evalue=7e-53, Organism=Homo sapiens, GI25306283, Length=391, Percent_Identity=31.2020460358056, Blast_Score=149, Evalue=9e-36, Organism=Escherichia coli, GI1789738, Length=697, Percent_Identity=38.7374461979914, Blast_Score=469, Evalue=1e-133, Organism=Escherichia coli, GI1790835, Length=477, Percent_Identity=24.5283018867925, Blast_Score=109, Evalue=5e-25, Organism=Escherichia coli, GI48994988, Length=173, Percent_Identity=30.0578034682081, Blast_Score=71, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17533571, Length=699, Percent_Identity=28.6123032904149, Blast_Score=297, Evalue=1e-80, Organism=Caenorhabditis elegans, GI17556745, Length=701, Percent_Identity=23.39514978602, Blast_Score=146, Evalue=4e-35, Organism=Saccharomyces cerevisiae, GI6323098, Length=704, Percent_Identity=30.8238636363636, Blast_Score=303, Evalue=5e-83, Organism=Saccharomyces cerevisiae, GI6322359, Length=792, Percent_Identity=25.1262626262626, Blast_Score=217, Evalue=5e-57, Organism=Drosophila melanogaster, GI24582462, Length=701, Percent_Identity=32.2396576319544, Blast_Score=327, Evalue=2e-89, Organism=Drosophila melanogaster, GI221458488, Length=709, Percent_Identity=26.2341325811001, Blast_Score=199, Evalue=8e-51,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 74333; Mature: 74202
Theoretical pI: Translated: 4.90; Mature: 4.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTPLEMQRTFALVGTGGCGKTSLAEMLLFNAGTTTRMGAIEEGTTSLDYEPEETRRRGS CCCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC VQPACATYMWNKNRHFLLDIPGDGNFTGDMECLLKGVDSVVFVLDAVDGVRPLAKKFWSM CCCHHHHEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH VRQAGLPVMIVINKLDRDRADFQMTFDGLSALGIRPVALQLPIRQGETFLGVADVLSGKA HHHCCCCEEEEEECCCCCCCCEEEEECCHHHCCCCEEEEEEECCCCCEEEEHHHHHCCCC HMFKPDGSTAEAEIPAGLADDVSLLRDITVENIAESDEILMEKYLEEGSLPLEDLHDGLR EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHH AGVIKGELIPVLTCSALENKGGAALLDAIEALLPSPLDRPAFEGEGGASRTADPEGPVAC HCCCCCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE FVFKTLADPFAGQLSLLRILSGTISGDVNLKNMRSEDNERLGSLLFLTGKNQTPCKEPIG EEHHHHCCCHHHHHHHHHHHHHCCCCCEEEHHCCCCHHHCCCEEEEEECCCCCCCCCCCC PGAIVAVAKLKNTRTGDTLCDEKAPFVLPMPHLPPQLITYALAPREKGEEDKVYAAMQRL CCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHEEECCCCCCCHHHHHHHHHHH LDEDITLKLGRDGENGDILLSGMGQLHIELSVEKAKRRFKVDIVLKTPKVPYRETVRGKC HCCCCEEEECCCCCCCCEEEECCCEEEEEEEEHHHCCEEEEEEEEECCCCCHHHCCCCEE QVQGRHKKQSGGRGQFGDCWIEMEGLPRGSGYQFEDAIVGGVIPRQYVPAIDKGVQEAAA EECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH RGFLAGCQVVDFRVKVYDGSYHTVDSSEMAFKVAGSLAFKKAMENLKPVLLEPIVLLTVS HHHHHCCEEEEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEEEE VPDESMGDVIGDLSSRRGKVLGSDSQGGSTEIKAHVPMSEVLRYAPDLRSMTGGQGFFTM CCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCHHHHHHHCCCHHHCCCCCCEEEE EFAHYEEAPQPVTEKIVAEYQGAKAAE EEHHHCCCCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure PTPLEMQRTFALVGTGGCGKTSLAEMLLFNAGTTTRMGAIEEGTTSLDYEPEETRRRGS CCCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC VQPACATYMWNKNRHFLLDIPGDGNFTGDMECLLKGVDSVVFVLDAVDGVRPLAKKFWSM CCCHHHHEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH VRQAGLPVMIVINKLDRDRADFQMTFDGLSALGIRPVALQLPIRQGETFLGVADVLSGKA HHHCCCCEEEEEECCCCCCCCEEEEECCHHHCCCCEEEEEEECCCCCEEEEHHHHHCCCC HMFKPDGSTAEAEIPAGLADDVSLLRDITVENIAESDEILMEKYLEEGSLPLEDLHDGLR EEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHH AGVIKGELIPVLTCSALENKGGAALLDAIEALLPSPLDRPAFEGEGGASRTADPEGPVAC HCCCCCCCEEEEEEHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEE FVFKTLADPFAGQLSLLRILSGTISGDVNLKNMRSEDNERLGSLLFLTGKNQTPCKEPIG EEHHHHCCCHHHHHHHHHHHHHCCCCCEEEHHCCCCHHHCCCEEEEEECCCCCCCCCCCC PGAIVAVAKLKNTRTGDTLCDEKAPFVLPMPHLPPQLITYALAPREKGEEDKVYAAMQRL CCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCCHHHHHEEECCCCCCCHHHHHHHHHHH LDEDITLKLGRDGENGDILLSGMGQLHIELSVEKAKRRFKVDIVLKTPKVPYRETVRGKC HCCCCEEEECCCCCCCCEEEECCCEEEEEEEEHHHCCEEEEEEEEECCCCCHHHCCCCEE QVQGRHKKQSGGRGQFGDCWIEMEGLPRGSGYQFEDAIVGGVIPRQYVPAIDKGVQEAAA EECCCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH RGFLAGCQVVDFRVKVYDGSYHTVDSSEMAFKVAGSLAFKKAMENLKPVLLEPIVLLTVS HHHHHCCEEEEEEEEEECCCEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHCCEEEEEEE VPDESMGDVIGDLSSRRGKVLGSDSQGGSTEIKAHVPMSEVLRYAPDLRSMTGGQGFFTM CCCHHHHHHHHHHHHCCCCEECCCCCCCCCEEEEECCHHHHHHHCCCHHHCCCCCCEEEE EFAHYEEAPQPVTEKIVAEYQGAKAAE EEHHHCCCCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA