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The map label for this gene is rfaF [C]

Identifier: 220905019

GI number: 220905019

Start: 2122334

End: 2123494

Strand: Reverse

Name: rfaF [C]

Synonym: Ddes_1756

Alternate gene names: 220905019

Gene position: 2123494-2122334 (Counterclockwise)

Preceding gene: 220905020

Following gene: 220905013

Centisome position: 73.9

GC content: 64.86

Gene sequence:

>1161_bases
ATGGGTGAGCGCGGCAACAGGCTGAACCGTTTTCTCGACCGGTGGGCAGGCATCCCGCTGACTGTCTGCACGGCGGGGCT
GCGGGCCGCAGCCGGAACAGCCCGGCTGAACATGCCGGCCGAACCGCAGCGGGTAGGGTTTCTCTGTCTTGGTGCCATTG
GCGACCTGCTGCTTTTGTCATCCCTGATTACGGCCCTGCGCAGGCGTCTTCCCCATGCGCGCTTTTACCTGTTGACCACC
AGCGGAAACGCCGCCACGGCGTCGCTGATTCCGGGCATTGATGAAAGCGCCTCTTTCAGCGTACGCAAGGTCCCGGCCAT
GCTGGACTGGCTGCGCAGAAAAAAGCTGGACATGCTTTTCGACAGCAGCCAGTGGCCCCGGCTCGGGGCTGTGCTGAGCA
ACCTGTCGGGAGCGCCCTGCACCGTGGGTTTTGATACCCCCGGGCAGTGCAGGGCCTGCGGTTATTCGCACCGGGTGCCG
CACTGCGCGGACAGGCACGAGGTGGAAAATTTTCTGGCCCTGGGCAAAGCGGTTTATGACGATCTGGAGGGCGAGCCATG
CCTTGCCCTGCCCGTCGAGGCTCCGGCGGATGCCGTCAGGGCTGATCACATGCTGACAGAGCTTGCGGGGGCGTGCCTGC
CGCGTGTTTATCTGCACATGTGGCCGTCGGGCATCCATGCCCGGCTCAAGGAATGGCCTTCGGGCCACTGGGCGGCCCTG
GCCCGGGAACTGGCCGGGCGCGGTTTTCAGGTCTGCCTCACCGGGGCGCAGGGCGACGCGGCGCGAAATGCGGCCTTTCT
TGTGGCTCACGCGGACTGTCCCGCCGTATCCCTTGCGGGCGATCTGTCGCTTGCCGGGCTTGCCTGGATGTTCTCCAGGT
CGGCAGGGGCTGTTTCTGTCAATACAGGAACCATGCATCTGGCGGCCCTTGCCGGCGCGCCCACAGTGGGGCTGCACGGG
CCTACCAATCCGCTCCGCTGGGGCCCCTGGGGCAGGAAGGTCCAGAGCCTGCTGCCGCATTCGGGGGCCTGTGCCTATCT
GAACCTTGGCTTTGAATATCCCCAGCCACCGGTGACATGTATGGAAAATCTGCCCGTGAGTGATGTGCTGGATGCTCTGG
CGCGCATGGGTGTGTGCGGGCCTGCATTAGCTGCTGACTGA

Upstream 100 bases:

>100_bases
ATTTTGACCAGTATTATATCAACAACTGGTCTGTATGGATGGATCTGTGGATTATGTGCAAAACCGTGCCTGTGGTCATT
CTGGGGCATGGAGCCTACTG

Downstream 100 bases:

>100_bases
CGTTTTCGGCCTGCGGGACCGCAGCATTCCATTTCACCAGAGATGCCCCAGGAGTAGCCATGCGTCTGCCAGACTTTGAG
CTGGAGGTATTTTTCAGCCG

Product: glycosyl transferase family 9

Products: NA

Alternate protein names: Heptosyltransferase Family Protein; Lipopolysaccharide Core Biosynthesis Heptosyltransferase; Lipopolysaccharide Heptosyltransferase III

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MGERGNRLNRFLDRWAGIPLTVCTAGLRAAAGTARLNMPAEPQRVGFLCLGAIGDLLLLSSLITALRRRLPHARFYLLTT
SGNAATASLIPGIDESASFSVRKVPAMLDWLRRKKLDMLFDSSQWPRLGAVLSNLSGAPCTVGFDTPGQCRACGYSHRVP
HCADRHEVENFLALGKAVYDDLEGEPCLALPVEAPADAVRADHMLTELAGACLPRVYLHMWPSGIHARLKEWPSGHWAAL
ARELAGRGFQVCLTGAQGDAARNAAFLVAHADCPAVSLAGDLSLAGLAWMFSRSAGAVSVNTGTMHLAALAGAPTVGLHG
PTNPLRWGPWGRKVQSLLPHSGACAYLNLGFEYPQPPVTCMENLPVSDVLDALARMGVCGPALAAD

Sequences:

>Translated_386_residues
MGERGNRLNRFLDRWAGIPLTVCTAGLRAAAGTARLNMPAEPQRVGFLCLGAIGDLLLLSSLITALRRRLPHARFYLLTT
SGNAATASLIPGIDESASFSVRKVPAMLDWLRRKKLDMLFDSSQWPRLGAVLSNLSGAPCTVGFDTPGQCRACGYSHRVP
HCADRHEVENFLALGKAVYDDLEGEPCLALPVEAPADAVRADHMLTELAGACLPRVYLHMWPSGIHARLKEWPSGHWAAL
ARELAGRGFQVCLTGAQGDAARNAAFLVAHADCPAVSLAGDLSLAGLAWMFSRSAGAVSVNTGTMHLAALAGAPTVGLHG
PTNPLRWGPWGRKVQSLLPHSGACAYLNLGFEYPQPPVTCMENLPVSDVLDALARMGVCGPALAAD
>Mature_385_residues
GERGNRLNRFLDRWAGIPLTVCTAGLRAAAGTARLNMPAEPQRVGFLCLGAIGDLLLLSSLITALRRRLPHARFYLLTTS
GNAATASLIPGIDESASFSVRKVPAMLDWLRRKKLDMLFDSSQWPRLGAVLSNLSGAPCTVGFDTPGQCRACGYSHRVPH
CADRHEVENFLALGKAVYDDLEGEPCLALPVEAPADAVRADHMLTELAGACLPRVYLHMWPSGIHARLKEWPSGHWAALA
RELAGRGFQVCLTGAQGDAARNAAFLVAHADCPAVSLAGDLSLAGLAWMFSRSAGAVSVNTGTMHLAALAGAPTVGLHGP
TNPLRWGPWGRKVQSLLPHSGACAYLNLGFEYPQPPVTCMENLPVSDVLDALARMGVCGPALAAD

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.-.-.- [C]

Molecular weight: Translated: 41023; Mature: 40892

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGERGNRLNRFLDRWAGIPLTVCTAGLRAAAGTARLNMPAEPQRVGFLCLGAIGDLLLLS
CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHH
SLITALRRRLPHARFYLLTTSGNAATASLIPGIDESASFSVRKVPAMLDWLRRKKLDMLF
HHHHHHHHHCCCCEEEEEEECCCCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DSSQWPRLGAVLSNLSGAPCTVGFDTPGQCRACGYSHRVPHCADRHEVENFLALGKAVYD
CCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
DLEGEPCLALPVEAPADAVRADHMLTELAGACLPRVYLHMWPSGIHARLKEWPSGHWAAL
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH
ARELAGRGFQVCLTGAQGDAARNAAFLVAHADCPAVSLAGDLSLAGLAWMFSRSAGAVSV
HHHHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHCCCCEEEE
NTGTMHLAALAGAPTVGLHGPTNPLRWGPWGRKVQSLLPHSGACAYLNLGFEYPQPPVTC
CCCCEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHH
MENLPVSDVLDALARMGVCGPALAAD
HHCCCHHHHHHHHHHCCCCCCHHCCC
>Mature Secondary Structure 
GERGNRLNRFLDRWAGIPLTVCTAGLRAAAGTARLNMPAEPQRVGFLCLGAIGDLLLLS
CCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHH
SLITALRRRLPHARFYLLTTSGNAATASLIPGIDESASFSVRKVPAMLDWLRRKKLDMLF
HHHHHHHHHCCCCEEEEEEECCCCEEHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DSSQWPRLGAVLSNLSGAPCTVGFDTPGQCRACGYSHRVPHCADRHEVENFLALGKAVYD
CCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
DLEGEPCLALPVEAPADAVRADHMLTELAGACLPRVYLHMWPSGIHARLKEWPSGHWAAL
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHH
ARELAGRGFQVCLTGAQGDAARNAAFLVAHADCPAVSLAGDLSLAGLAWMFSRSAGAVSV
HHHHHCCCEEEEEECCCCCCCCCEEEEEEECCCCCEEECCCHHHHHHHHHHHCCCCEEEE
NTGTMHLAALAGAPTVGLHGPTNPLRWGPWGRKVQSLLPHSGACAYLNLGFEYPQPPVTC
CCCCEEEEECCCCCEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCCCCHHH
MENLPVSDVLDALARMGVCGPALAAD
HHCCCHHHHHHHHHHCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA