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The map label for this gene is comF [H]

Identifier: 220904997

GI number: 220904997

Start: 2098129

End: 2099028

Strand: Direct

Name: comF [H]

Synonym: Ddes_1733

Alternate gene names: 220904997

Gene position: 2098129-2099028 (Clockwise)

Preceding gene: 220904996

Following gene: 220904998

Centisome position: 73.02

GC content: 64.67

Gene sequence:

>900_bases
ATGAAAACTGGTGAAAACAACAGCCAGCATGGCTGTATGCCCGGCAAAGAAGGCCTGACCGCACGGCTGGGCATGGGGTT
TACCGCGGCAGCCCGTTTTCTGGGTTTTGCGCAGGCACGCTGCTTTCACTGTTTGCGCCCCTTCACGCCCGGCGAAGAAA
TTTCACCTTTTCCCCATCACCCTGCCGCAGCACCGGATATTCCCGGCCCGCTGGCTCCCCTGTGTCCGCAATGCCGCATC
CTGCTGGCTCCGTATGCAGGACCGCGCTGCCCGCTGTGCGGCCTGCCCTCCGCCCCTTCGCCTGAAGTTTCTGCTTTGCC
CCACCTGCAAAGGGGCAGCCTGTGCGGACATTGTCTTACAACTCCGCCCCCGTGGTCCGGCGCTGCCTTTCATGGCCTTT
ACAAAGAAGCATTGCGCCACGTGCTTCTGCGGCTCAAGTTTGACGGGCATCTCTACCTGGCCCCCCTGCTCGGAGCCTTC
CTGCAAGAGGCCGCCCGCTGCCTGCCCCGCCCCGACGCCCTGGTGGCTGTTCCACAATACCCCGACCATCTGCGCCACAG
GGGGTACAATCAGGCGCACGAACTTGCCAGGGCATTGAGCGCGCAGACCGGGCTTGAACTCATACCCGGCCTGTTGTGCC
GCACACGGCCCGGCCCGGCGCAGATAGGTCTCAGCGCCCGCGCGCGGCCTGACAACGTGCGCCACAGTTTTGCTTCTTCA
CCCGAGGTTAAAGGTCGCTGTTTGTGGCTGGTGGACGATGTGATGACCACCGGCAGCACCCTGCGTGCCGCCTGCCGCGC
CCTGCGCCATGCCGGAGCCGCACGGGTGTATATTCTTGTGGCGGCGCGCACCCCGAAAGATGCGGCAGGCCATCCGGCAG
ATGCCCCGACGGGGCTGTAG

Upstream 100 bases:

>100_bases
AGTGCCGGGCTATGTTCCGGACTCCCACCCCGGCAAGGGCTGCGGCAAAGACAGACCATCGTCTGCAGGGTAACGCCGGA
CCGGCCTTTTTGTTTTCGTT

Downstream 100 bases:

>100_bases
ACAAACCCTGAGGCCAGATGCCGGATACCCCGCCCCCGGCCACATGACAATGTCGGGGCGTTCTGCTATGCTTGCGTCAA
TAAAAAAGCCCGAATCCGTA

Product: ComF family protein

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MKTGENNSQHGCMPGKEGLTARLGMGFTAAARFLGFAQARCFHCLRPFTPGEEISPFPHHPAAAPDIPGPLAPLCPQCRI
LLAPYAGPRCPLCGLPSAPSPEVSALPHLQRGSLCGHCLTTPPPWSGAAFHGLYKEALRHVLLRLKFDGHLYLAPLLGAF
LQEAARCLPRPDALVAVPQYPDHLRHRGYNQAHELARALSAQTGLELIPGLLCRTRPGPAQIGLSARARPDNVRHSFASS
PEVKGRCLWLVDDVMTTGSTLRAACRALRHAGAARVYILVAARTPKDAAGHPADAPTGL

Sequences:

>Translated_299_residues
MKTGENNSQHGCMPGKEGLTARLGMGFTAAARFLGFAQARCFHCLRPFTPGEEISPFPHHPAAAPDIPGPLAPLCPQCRI
LLAPYAGPRCPLCGLPSAPSPEVSALPHLQRGSLCGHCLTTPPPWSGAAFHGLYKEALRHVLLRLKFDGHLYLAPLLGAF
LQEAARCLPRPDALVAVPQYPDHLRHRGYNQAHELARALSAQTGLELIPGLLCRTRPGPAQIGLSARARPDNVRHSFASS
PEVKGRCLWLVDDVMTTGSTLRAACRALRHAGAARVYILVAARTPKDAAGHPADAPTGL
>Mature_299_residues
MKTGENNSQHGCMPGKEGLTARLGMGFTAAARFLGFAQARCFHCLRPFTPGEEISPFPHHPAAAPDIPGPLAPLCPQCRI
LLAPYAGPRCPLCGLPSAPSPEVSALPHLQRGSLCGHCLTTPPPWSGAAFHGLYKEALRHVLLRLKFDGHLYLAPLLGAF
LQEAARCLPRPDALVAVPQYPDHLRHRGYNQAHELARALSAQTGLELIPGLLCRTRPGPAQIGLSARARPDNVRHSFASS
PEVKGRCLWLVDDVMTTGSTLRAACRALRHAGAARVYILVAARTPKDAAGHPADAPTGL

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=201, Percent_Identity=34.8258706467662, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 31916; Mature: 31916

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTGENNSQHGCMPGKEGLTARLGMGFTAAARFLGFAQARCFHCLRPFTPGEEISPFPHH
CCCCCCCCCCCCCCCCCCCEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PAAAPDIPGPLAPLCPQCRILLAPYAGPRCPLCGLPSAPSPEVSALPHLQRGSLCGHCLT
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
TPPPWSGAAFHGLYKEALRHVLLRLKFDGHLYLAPLLGAFLQEAARCLPRPDALVAVPQY
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEECCCC
PDHLRHRGYNQAHELARALSAQTGLELIPGLLCRTRPGPAQIGLSARARPDNVRHSFASS
CHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHCCC
PEVKGRCLWLVDDVMTTGSTLRAACRALRHAGAARVYILVAARTPKDAAGHPADAPTGL
CCCCCEEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTGENNSQHGCMPGKEGLTARLGMGFTAAARFLGFAQARCFHCLRPFTPGEEISPFPHH
CCCCCCCCCCCCCCCCCCCEEHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PAAAPDIPGPLAPLCPQCRILLAPYAGPRCPLCGLPSAPSPEVSALPHLQRGSLCGHCLT
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
TPPPWSGAAFHGLYKEALRHVLLRLKFDGHLYLAPLLGAFLQEAARCLPRPDALVAVPQY
CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCCCCEEECCCC
PDHLRHRGYNQAHELARALSAQTGLELIPGLLCRTRPGPAQIGLSARARPDNVRHSFASS
CHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHHCCC
PEVKGRCLWLVDDVMTTGSTLRAACRALRHAGAARVYILVAARTPKDAAGHPADAPTGL
CCCCCEEEEEEHHHHHCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]